Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00272 ATGGCCGGTGGTGGTGGTGGTGGTGGTAGTTCACTGTCAGGGTTGCAAGATCATGTGAAGTTAGCTAGAGATTATGCTCTTGAAGGTCTCTATGATACTTCTATCATCTTCTTTGATGGTGCTGTTGCACAAATCAACAGGCATTTAAACAGTGTTGATGACCCTTTAATTCGTGCGAAATGGATGAATGTTAAGAAAGCTCTTTCTGAAGAAACTGAAGTTGTTAAACAACTAGATGCAGATAAAAGGGCATTTAAAGATAACCCTATTGGAAGACGTCCTCCGTCGCCTCCAATTTCTACTAAATCTTCATTTGTTTTTCAGCCATCAGATGAGTATCCTACTTCATCTGGTTCTTCCTTTGACGATCCCGATGTGTGGAGGCCGCCTAGTAGAGATACTAGAAGACCCGCAAGGGGTGGTCAAGTGGGCAATCGGATATCTCAACAAGATAGTAAATGGGCTCGAGGTGCTACAACAAAGACAAGTGCAGCTGGCCGTGGTGCAAAGGCTGGTGGTGTTAAAAGCAAGGTTAACTCAGGGGCCCGAACATCAACTCCCGTAAAGAAGGGTGGTGCTTCTGGAAAGTCTAGCAAGACAGACACAACTAATGGCGATGCTGAAGATGGGAAGTCAAATAGGGTACAATATGAAGGTCCTGACCCTGAATTGGCCGAAATGCTTGAAAGGGACGTGTTAGAAACCTCTCCCGGAGTGAGATGGGATGATGTTGCAGGTCTTACTGAAGCAAAAAGGCTTTTAGAAGAAGCTGTTGTGCTTCCTTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTTATGTTTGGTCCTCCGGGAACTGGAAAGACACTTCTTGCTAAGGCAGTTGCTACTGAATGTGGGACCACCTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAGAGTGAGCGAATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATCGATTCTCTATGCAATGCTAGAGGGGCTTCTGGAGAGCACGAATCATCCCGAAGAGTTAAGTCTGAACTTCTAGTTCAGGTCGATGGTGTAAGCAACACTGCAACAAATGAAGATGGTAGCCGAAAACTAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGAGAATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAATTGATCCGGATAAATTTGAAGACCGTTGAGGTGGCCGCTGATGTCAACATAGATGAAGTGGCTCGCAGAACTGATGGCTATAGTGGAGACGATTTGACAAACGTCTGCCGTGATGCTTCCTTAAACGGAATGAGGCGGAAGATAGCAGGAAAGACTCGCGATGAAATCAAGAATATGTCTAAGGATGAAATTTCAAATGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTAGTGAAGGTCCAACGAAGTGTTTCTCCGGCCGATATTGAACGCCATGAGAAATGGTTTCATGAATTTGGATCAGCATAA 1581 0.4409 MAGGGGGGGSSLSGLQDHVKLARDYALEGLYDTSIIFFDGAVAQINRHLNSVDDPLIRAKWMNVKKALSEETEVVKQLDADKRAFKDNPIGRRPPSPPISTKSSFVFQPSDEYPTSSGSSFDDPDVWRPPSRDTRRPARGGQVGNRISQQDSKWARGATTKTSAAGRGAKAGGVKSKVNSGARTSTPVKKGGASGKSSKTDTTNGDAEDGKSNRVQYEGPDPELAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKLVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISNDPVAMCDFEEALVKVQRSVSPADIERHEKWFHEFGSA 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00272 526 MobiDBLite consensus disorder prediction 202 216 - -
Trre7g00272 526 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 13 526 IPR028596 GO:0008017|GO:0008568|GO:0051013
Trre7g00272 526 CDD Kp60-NTD 16 80 - -
Trre7g00272 526 FunFam Katanin p60 ATPase-containing subunit A1 10 86 - -
Trre7g00272 526 Gene3D - 10 86 - -
Trre7g00272 526 Pfam AAA+ lid domain 437 478 IPR041569 -
Trre7g00272 526 Gene3D - 416 502 - -
Trre7g00272 526 MobiDBLite consensus disorder prediction 85 219 - -
Trre7g00272 526 Pfam ATPase family associated with various cellular activities (AAA) 278 415 IPR003959 GO:0005524|GO:0016887
Trre7g00272 526 FunFam Katanin p60 ATPase-containing subunit A1 416 502 - -
Trre7g00272 526 MobiDBLite consensus disorder prediction 97 122 - -
Trre7g00272 526 Gene3D - 236 516 IPR027417 -
Trre7g00272 526 PANTHER AAA DOMAIN-CONTAINING 31 525 - -
Trre7g00272 526 Pfam Vps4 C terminal oligomerisation domain 479 524 IPR015415 -
Trre7g00272 526 ProSitePatterns AAA-protein family signature. 387 406 IPR003960 GO:0005524|GO:0016887
Trre7g00272 526 FunFam Katanin p60 ATPase-containing subunit A1 236 404 - -
Trre7g00272 526 MobiDBLite consensus disorder prediction 143 159 - -
Trre7g00272 526 MobiDBLite consensus disorder prediction 178 201 - -
Trre7g00272 526 SMART AAA_5 274 417 IPR003593 GO:0016887
Trre7g00272 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 523 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00272 Trre-Chr7 1821344 1824796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00272 230 518 Calmodulin-binding Proteins AT3G56690 39.933 1.91e-50 184