Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00219 ATGGGTGAATTGAAAGATACCGAGGTTTACGAGGAAGAGCTTATCGACTACGAAGAAGAAGATGAAAAGGCTCTTGATTCTACTAAACCCTCTACTGAAACTGTCAAGAAGGGCTACGTTGGGATCCATAGTTCGGGATTTCGGGACTTCTTGTTGAAACCAGAGCTTCTTCGAGCGATTGTAGATTCGGGATTTGAGCATCCTTCAGAAGTGCAACACGAGTGCATCCCTCAAGCAATTTTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACCGCTGTTTTTGTTCTGTCAACACTTCAGCAAATTGATCCTGTTCCTGGTCAGGTTGCAGCACTTGTTCTTTGCCACACAAGAGAACTAGCTTATCAGATTTGTCACGAAGTTGAAAGATTCAGCACATATCTTCCAGATATAAAAGTTGCTGTTTTCTATGGTGGTGTCAACATCAAGGTTCACAAAGAATTGCTCAAGAATGAGTGTCCCCACATTGTTGTTGGAACACCTGGGAGGATTCTGGCTCTGACTAGAGACAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTGGAATCACTTGACATGCGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAACAAGTGATGATGTTTTCAGCTACACTCAGCAAAGATATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAAATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTTCAGCACTACATTAAATTACAAGAGCCTGAGAAAAATCGTAAGCTGAATGATCTTCTAGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAAAGTGTTAGCAGAGCAGCAGAACTGAACAAGTTGCTTGTTGAGTGTAACTTCCCATCAATATGCATACATTCTGGAATGTCACAAGAAGAAAGATTGAAGCGATACAAGGGTTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGGATTGATATTGAACGTGTTAATATAGTCATCAACTATGACATGCCTGATTCTGCTGATACCTATCTTCATAGGGTGGGAAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACCTTTGTGTCTTCTGCTGGCGACTCTGAAGTTCTTAATCAGGTGCAATCTAGATTTGAGGTCGATATAAAGGAGCTTCCTGAACAAATTGACACCTCCACATATAGTAAGATTATTTTCCTCAGTACTTTGGCCTAA 1302 0.4117 MGELKDTEVYEEELIDYEEEDEKALDSTKPSTETVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKDIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQSRFEVDIKELPEQIDTSTYSKIIFLSTLA 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00219 433 CDD SF2_C_DEAD 262 391 - -
Trre7g00219 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 398 IPR027417 -
Trre7g00219 433 SMART ultradead3 64 265 IPR014001 -
Trre7g00219 433 FunFam DEAD-box ATP-dependent RNA helicase 258 426 - -
Trre7g00219 433 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 249 IPR014001 -
Trre7g00219 433 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 400 - -
Trre7g00219 433 CDD DEADc_DDX39 44 251 - -
Trre7g00219 433 SMART helicmild6 301 382 IPR001650 -
Trre7g00219 433 FunFam DEAD-box ATP-dependent RNA helicase 56-like 33 251 - -
Trre7g00219 433 Gene3D - 258 426 IPR027417 -
Trre7g00219 433 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
Trre7g00219 433 Pfam Helicase conserved C-terminal domain 275 382 IPR001650 -
Trre7g00219 433 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 422 IPR001650 -
Trre7g00219 433 Pfam DEAD/DEAH box helicase 70 235 IPR011545 GO:0003676|GO:0005524
Trre7g00219 433 Gene3D - 41 257 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00219 Trre-Chr7 1521826 1528125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00219 1 423 Eukaryotic Initiation Factors Gene Family AT5G11200 82.796 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00219 K12812 - gmx:100785358 800.431