Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00218 ATGATTCGTCATCCTTTATTGAAAAGGAGGGTGTGGTTAGGAACATTTGAGACAGCTGAAGAAGCAGCTAGAGCATATGATGAAGCAGCAATTTTAATGAGTGGAAGAAATGCAAAAACAAATTTTCCTATTTCTGATAACAAGCCAATAACAAATATCAACAACAATAACCAAAAATCTTTTGCAACTTCCTCTTCAAATTCTACTACTAATTCATCATTATCTGCAATTCTAAGTGCAAAGCTTAGGAAATGTTGCAAATCACCTTCACCTTCACTTACTTGTCTAAGGCTTGACACTGAGAATTCTCACTTTGGAGTGTGGCAAAAAAGAGCGGGCCCTCGTTCGGACTCCAATTGGATCATGATGGTCGAATTGGAAAGGAAGAAGAAAAAAGAAGACGGAGAAATTGTGCCTAGTTCGGATTCGGAAATATTACCTCCCATTGTTATTGATAATAATGATTCAGACAAGGTCGTAAAACCGGAAAATGAAGAACAAGAAGAAGATGAAGGAAATAATAATAACAATGGATTGGATGAAGAACAAAGAATTGCACTTCAAATGATAGAAGAACTTCTTAATCATTAA 591 0.357 MIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPISDNKPITNINNNNQKSFATSSSNSTTNSSLSAILSAKLRKCCKSPSPSLTCLRLDTENSHFGVWQKRAGPRSDSNWIMMVELERKKKKEDGEIVPSSDSEILPPIVIDNNDSDKVVKPENEEQEEDEGNNNNNGLDEEQRIALQMIEELLNH 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00218 196 CDD AP2 1 45 IPR001471 GO:0003700|GO:0006355
Trre7g00218 196 MobiDBLite consensus disorder prediction 46 69 - -
Trre7g00218 196 ProSiteProfiles AP2/ERF domain profile. 1 43 IPR001471 GO:0003700|GO:0006355
Trre7g00218 196 SMART rav1_2 2 49 IPR001471 GO:0003700|GO:0006355
Trre7g00218 196 MobiDBLite consensus disorder prediction 130 184 - -
Trre7g00218 196 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 154 - -
Trre7g00218 196 Gene3D AP2/ERF domain 1 45 IPR036955 GO:0003700|GO:0006355
Trre7g00218 196 Pfam AP2 domain 8 34 IPR001471 GO:0003700|GO:0006355
Trre7g00218 196 SUPERFAMILY DNA-binding domain 2 45 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00218 Trre-Chr7 1512017 1513604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00218 2 195 AP2-EREBP Transcription Factor Family AT1G15360 57.732 2.21e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g00218 AP2 2.3e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00218 - - gmx:100796962 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00218 7 1512017 1513604 Trre7g00218 7 1512017 1513604 ECH