Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00177 ATGGATGACGATTCAGGTAACAATGGAACCAATGAAGTTGTTTTGAACGTAAACAAGGATGTCCCTAACATGACTGAAGACTCAAGCTCATATGCTACTGCTTCTTTCTTGCAAAAGTTGGTAGCCGAGGTGATAGGCACATATTTCTTGATATTTGCTGGTTGTGCTTCTGTCGCGGTGAACAAGAACAACGATAGCGTTGTTACGCTTCCCGGGATCTCAATTGTTTGGGGACTTGCTGTAATGGTGTTAGTTTATTCTCTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCAGTTACCATTGCTTTTGCTACCACAAGAAGGTTTCCCTTCAAACAGGTACCAGCTTATGTAGCAGCACAAGTCCTTGGATCTACACTTGCAAGTGGAACTCTTAGACTATTATTTAGTGGAAAAGATAATCAGTTTGTAGGAACACTTGCAGCTGGGTCTAATCTTCAAGCTTTTGTGATTGAATTCATAATCACTTTTTATCTTATGTTTATTATATCTGGAGTTGCCACCAATAACAGAGCAATTGGTGAATTGGCCGGGATTGCTGTTGGATCTACGGTTCTTTTGAATGTGATGTTTGCAGGGCCAATCACAGGAGCATCAATGAATCCAGCAAGAAGCATAGGACCTGCATTTGTACACAAAGAATACAAAGGAATATGGATATACTTGGTGTCTCCAATTCTAGGAGCTGTGGCCGGTGCATGGGTTTATAACGGCATTCGGTACACGAATAAGCCAGTTCGCGAGATCACCAAGAGTGCATCTTTCCTAAAACCAGCAAAGCCATAG 810 0.4185 MDDDSGNNGTNEVVLNVNKDVPNMTEDSSSYATASFLQKLVAEVIGTYFLIFAGCASVAVNKNNDSVVTLPGISIVWGLAVMVLVYSLGHISGAHFNPAVTIAFATTRRFPFKQVPAYVAAQVLGSTLASGTLRLLFSGKDNQFVGTLAAGSNLQAFVIEFIITFYLMFIISGVATNNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFVHKEYKGIWIYLVSPILGAVAGAWVYNGIRYTNKPVREITKSASFLKPAKP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00177 269 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g00177 269 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g00177 269 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g00177 269 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g00177 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g00177 269 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g00177 269 Gene3D Glycerol uptake facilitator protein. 2 259 IPR023271 -
Trre7g00177 269 CDD MIP 38 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g00177 269 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g00177 269 SUPERFAMILY Aquaporin-like 33 258 IPR023271 -
Trre7g00177 269 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Trre7g00177 269 PANTHER AQUAPORIN NIP2-1 29 264 IPR034294 -
Trre7g00177 269 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00177 Trre-Chr7 1240548 1243867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00177 2 269 Major Intrinsic Protein MIP AT5G37810 54.815 3.19e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00177 K09874 - gmx:100798526 437.573