Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00158 ATGGAGGATTCATGGGAAAATTTTCATCTTCACACGGAATTGGAATGCGGTGATGATTATTTCATTGAAAATTACAATGCTTTTAACATTGACGGTGACGATTTTCTTAGAGAGATTCTGTTACAGACACCACCAGAAGAAAGTGAAAACGGTTCCGTTACTATTAACGGTGGTGTTGAGGTTGTTGAAAACATGGTTAAAAGTAACGATTCAAATTCAACCGTGTCTCAAAAACAAGAACAAGAACAACAACATGGTTTGAAATCGAAAAAGGTTGTTGTTCCTCGTAGATGTTCTTCACCAACGAGTTACATTTTGTCTTTTGATAATTCAACTATGATACCAGCTACACCTGAACCTTGTGTTAATTTGGAAGCTGGTAAACGCGATTATTGTTCTAATTCTGATTATTCTAAGAAGAATAAAAGGAACCTTGAAAGTAGTGAAAAAGATGAAACTATGAAAATAAATAAAAATCAAGGAGTGAAGAAAACAAGAAGTAGTTCTCAGTGTGCTGATCATATAATGGCAGAGAGAAAAAGGAGACAAGAATTGACTGAGAGATTCATCGCACTTTCAGCAACCATTCCTGGCTTGAGCAAGACAGACAAAGCTTCAATACTTCGAGCAGCAATTGATTATGTGAAACAGCTTCAAGAACGTGTTCATGAGCTAGAAGAGAAACAAGACAAAAATGTTGGTGTCACACAAGTGATGGTCCTCAACAAAATTAATTCATGTCAAATTAATAATAATATTGAAGATACAAATTCTCGTGACACAAGTTGTGGTGGTGATTGTAGCAACATTTTCCCAGAGATTGAAGCAAGAATTATGGGAAAAGAAGTGCTTATTGAAATTCATTGTGAGAAACAAAATGGAATTGAGCTCAAATTACTTGACCACATTGAAAATCTTCAACTTTTTGTCACTGGTACTTGTGTATTGCCATTTGGGAAATCTGCTATGTCCATTACTATTATTGCTCAGATGGGTGATGGGTACAAAGTGACAGTGCATGATCTAGTGAAAAGCATTAGGCAAGTGCTCGTGAAACCTCAAATAAGATGCCAAAGTGATCCGTACTAG 1089 0.36 MEDSWENFHLHTELECGDDYFIENYNAFNIDGDDFLREILLQTPPEESENGSVTINGGVEVVENMVKSNDSNSTVSQKQEQEQQHGLKSKKVVVPRRCSSPTSYILSFDNSTMIPATPEPCVNLEAGKRDYCSNSDYSKKNKRNLESSEKDETMKINKNQGVKKTRSSSQCADHIMAERKRRQELTERFIALSATIPGLSKTDKASILRAAIDYVKQLQERVHELEEKQDKNVGVTQVMVLNKINSCQINNNIEDTNSRDTSCGGDCSNIFPEIEARIMGKEVLIEIHCEKQNGIELKLLDHIENLQLFVTGTCVLPFGKSAMSITIIAQMGDGYKVTVHDLVKSIRQVLVKPQIRCQSDPY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00158 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 230 IPR036638 GO:0046983
Trre7g00158 362 Gene3D - 157 232 IPR036638 GO:0046983
Trre7g00158 362 PANTHER BHLH TRANSCRIPTION FACTOR 66 352 - -
Trre7g00158 362 Coils Coil 208 228 - -
Trre7g00158 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Trre7g00158 362 Pfam Helix-loop-helix DNA-binding domain 171 219 IPR011598 GO:0046983
Trre7g00158 362 MobiDBLite consensus disorder prediction 68 93 - -
Trre7g00158 362 SMART finulus 175 224 IPR011598 GO:0046983
Trre7g00158 362 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00158 Trre-Chr7 1100520 1105255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00158 134 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.553 1.64e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g00158 HLH 9.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00158 - - psat:127105379 430.254