Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00156 ATGATGAACATTGAAAACTTCTCACAAGACCTTACACCAATTCCAACAACCACCATCACCACCTTAAACATTCCGAAACACAACCCACTTCAACAAACATCTCTCGAAGGAATCGCCGCTATTGTAGGGGAACAAATCCTCTACGGACCCCACAACACCAAAACGACACCACCCACTTGCGTTTCACACCTCAAAACCAAAACAGAACAAACAAAAAACTACAGAGGAGTTAGAAAACGACCATGGGGAAGATGGTCAGCTGAAATACGTGACAGAATCGGTCGGTGTCGTCACTGGTTAGGAACATTTGATACTGCGGAAGAAGCGGCGCGTGCTTATGACGCGGCAGCTAGGCGATTGAGAGGTTCTAAAGCAAGAACTAATTTTAAGATACCTTCTGTTTTGCCTGTACCATTATCTCCAAACTCGAACGAGTCTTGTTCGAGTTCGGAGAATAATGGTAAGAAAAAAGTTGTGCGTAATAGTGTTAGGAAATGTTGTGTTGTTAATTCTGTTGGAGAGTTGTTTAGTGGTGTGCCTGAAGTTAGAAGAGATGGAGATTATGATAATAATAATGGGAACGTTGGATTTAGTGGTGGTAGAAATAGTGCTGGAATGGTGGTGTAG 627 0.4274 MMNIENFSQDLTPIPTTTITTLNIPKHNPLQQTSLEGIAAIVGEQILYGPHNTKTTPPTCVSHLKTKTEQTKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVLPVPLSPNSNESCSSSENNGKKKVVRNSVRKCCVVNSVGELFSGVPEVRRDGDYDNNNGNVGFSGGRNSAGMVV 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00156 208 CDD AP2 72 131 IPR001471 GO:0003700|GO:0006355
Trre7g00156 208 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Trre7g00156 208 Gene3D AP2/ERF domain 72 131 IPR036955 GO:0003700|GO:0006355
Trre7g00156 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 65 153 - -
Trre7g00156 208 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Trre7g00156 208 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Trre7g00156 208 Pfam AP2 domain 73 122 IPR001471 GO:0003700|GO:0006355
Trre7g00156 208 SUPERFAMILY DNA-binding domain 73 130 IPR016177 GO:0003677
Trre7g00156 208 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Trre7g00156 208 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00156 Trre-Chr7 1082033 1082659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00156 7 136 AP2-EREBP Transcription Factor Family AT1G80580 54.074 3.86e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g00156 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00156 - - cam:101490906 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00156 7 1082033 1082659 Trre7g00156 7 1082033 1082659 ECH