Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00147 ATGGCAAGACCACAACAACGTTATCGAGGTGTTCGTCAGAGACATTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCTTTATTGAAGACAAGAATATGGTTAGGAACATTTGAAACAGCAGAGGATGCAGCAAGAGCATATGATGAAGCAGCAAGATTAATGTGTGGACCAAAAGCACGCACCAATTTCCCATACAACCCAAATGGACCACAATCATCTTCATCTAAGCTTCTTTCAGCTACTTTAACTGCAAAGCTAAATAAATGTCACATGGCTTCTCTTTCTCTTCAAATGTCCAAACAACAATCACCACCACAAAAAGAACCACAACATATTTCAACACAAAGTTTCAATTCTTCTATTACTAATAACACTTTTGTCTATGGTAATGACATTGGTGGAACAAGTGGTGAAACTAGTTTAATTAGATGGCTTGATGATGGAAATAGTTTTGTTGGTTTTGAAGGTCAACAAGTTGAAGTTTCTAATCAACAATTTCAACCTGTTCTTGAAGATGATCACATCGAACAAATGATTCAAGAGTTGCTTGATTCTGGCTGTTCAATTGAGATTTGTTCCGTCGGTTCGTCTTAG 594 0.3805 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSATLTAKLNKCHMASLSLQMSKQQSPPQKEPQHISTQSFNSSITNNTFVYGNDIGGTSGETSLIRWLDDGNSFVGFEGQQVEVSNQQFQPVLEDDHIEQMIQELLDSGCSIEICSVGSS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00147 197 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Trre7g00147 197 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Trre7g00147 197 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Trre7g00147 197 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 111 - -
Trre7g00147 197 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Trre7g00147 197 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Trre7g00147 197 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Trre7g00147 197 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Trre7g00147 197 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Trre7g00147 197 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00147 Trre-Chr7 1011215 1012610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00147 1 194 AP2-EREBP Transcription Factor Family AT5G25190 61.856 3.44e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g00147 AP2 8.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00147 - - gmx:100777851 249.595