Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00146 ATGGGGATTTGCTGGAGTTATCCACCTAAAGATCCAACTCCAACAGGAACTGTTACACCTGCAGGGATATCTCATTCCCAGACCATAAGTGGAAGCTATGAAGCAACTTCTAATTTGAGGATCTTCACTTTTGCTAAATTGAAGGCTGCTACCAAGAATTTCAAAGCTGATACACTTCTTGGTGAAGGAGGTTTTGGTAAAGTCTACAAGGGATGGCTTGATTCCAAGAATAGTAGTAGTGGAACTACCGTTGCCGTCAAAAAATTGAACTCTGAAGGTTACCAAGGACTCGAGGAGTGGAAGTCAGAAATACATTTTCTAGGACGGCTTTATCATCCTAACCTTGTTAAGCTGTTGGGATACTGTTACGAGGAAACAGAACTTCTTCTTGTTTATGAATACATGCAGAAGGGCAGTTTGGAACATCATCTCTTTGGTTCATAA 444 0.4099 MGICWSYPPKDPTPTGTVTPAGISHSQTISGSYEATSNLRIFTFAKLKAATKNFKADTLLGEGGFGKVYKGWLDSKNSSSGTTVAVKKLNSEGYQGLEEWKSEIHFLGRLYHPNLVKLLGYCYEETELLLVYEYMQKGSLEHHLFGS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00146 147 PANTHER OS01G0588500 PROTEIN-RELATED 36 145 - -
Trre7g00146 147 ProSiteProfiles Protein kinase domain profile. 54 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g00146 147 Gene3D Phosphorylase Kinase; domain 1 18 134 - -
Trre7g00146 147 SUPERFAMILY Protein kinase-like (PK-like) 26 146 IPR011009 -
Trre7g00146 147 ProSitePatterns Protein kinases ATP-binding region signature. 60 88 IPR017441 GO:0005524
Trre7g00146 147 FunFam Serine/threonine-protein kinase BIK1 22 134 - -
Trre7g00146 147 Pfam Protein tyrosine and serine/threonine kinase 56 144 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00146 Trre-Chr7 1005729 1006479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00146 34 145 Glycoside Hydrolase AT3G07070 49.123 4.49e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre7g00146 PK_Tyr_Ser-Thr 5.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00146 - - mtr:11430234 220.705