Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00116 ATGGCCAAGAAATCTCATAAAACCACTTCTTCTAATTCTTCTTCAACCACCATGGTGAAACGTAAACGTAAAAGCATCCCAAGAAACTCACCTCCACAAAGAAGCTCAATTTATAGGGGTGTTACAAGACATCGTTGGACTGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATGAATCACAAAGCAAAAAAGGAAGACAAGGAGCATATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTATTGGGGCCAAGATACAATTCTCAATTTTCAAGTATCAAATTATCAAGAGGAGCTCAAAGAGATGGAGGGTCAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGTAGTGGATTTTCTAGAGGAGTCTCAAAATACAGAGGTGTTGCAAGACACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTCGGCAACAAATATTTATACCTTGGAACTTACGCTACACAAGAAGAAGCAGCCACAGCATATGACGTGGCAGCAATACAGTACAGAGGACTTAACGCTGTTACAAACTTTGATCTTAGCCGTTATAGCAACTGGTTATATCCTAAAACTCAAGACAACAATAATAATAACAACCACAATAATCAAAATTCTAGCAATAATCAAGAGCTAGATCTTAATCAAGAACTTGATGTCAGTGCCACATCAGCATCTTCGCCACTCGATCACATCTTAAAATCATCAAAATTCACGGAAATGATAGAAAAAACATTACCGGACGAAATTGAAGATAGTTACACTCCACCATCTTCTGAGTCAACTCCTCCACGTCGTACATTTCCCGAAGATATTCAAACGATTTTTGAAACACAAGATTCAAGTATCTACACTGAAAATGATCATGACATCATATTTGGTGAGTTAAGCTCAATTGATGCCCCAATTTTTCATTACGGACTTGATGCTTGA 975 0.3836 MAKKSHKTTSSNSSSTTMVKRKRKSIPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQGAYDDEEAAARAYDLAALKYWGQDTILNFQVSNYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDVAAIQYRGLNAVTNFDLSRYSNWLYPKTQDNNNNNNHNNQNSSNNQELDLNQELDVSATSASSPLDHILKSSKFTEMIEKTLPDEIEDSYTPPSSESTPPRRTFPEDIQTIFETQDSSIYTENDHDIIFGELSSIDAPIFHYGLDA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00116 324 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 230 - -
Trre7g00116 324 MobiDBLite consensus disorder prediction 1 20 - -
Trre7g00116 324 CDD AP2 135 196 IPR001471 GO:0003700|GO:0006355
Trre7g00116 324 SUPERFAMILY DNA-binding domain 36 102 IPR016177 GO:0003677
Trre7g00116 324 ProSiteProfiles AP2/ERF domain profile. 37 100 IPR001471 GO:0003700|GO:0006355
Trre7g00116 324 SUPERFAMILY DNA-binding domain 135 196 IPR016177 GO:0003677
Trre7g00116 324 FunFam AP2-like ethylene-responsive transcription factor 36 102 - -
Trre7g00116 324 MobiDBLite consensus disorder prediction 260 281 - -
Trre7g00116 324 MobiDBLite consensus disorder prediction 266 281 - -
Trre7g00116 324 MobiDBLite consensus disorder prediction 204 223 - -
Trre7g00116 324 Pfam AP2 domain 37 92 IPR001471 GO:0003700|GO:0006355
Trre7g00116 324 Pfam AP2 domain 135 186 IPR001471 GO:0003700|GO:0006355
Trre7g00116 324 ProSiteProfiles AP2/ERF domain profile. 136 194 IPR001471 GO:0003700|GO:0006355
Trre7g00116 324 PRINTS Ethylene responsive element binding protein signature 176 196 IPR001471 GO:0003700|GO:0006355
Trre7g00116 324 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Trre7g00116 324 Gene3D AP2/ERF domain 37 102 IPR036955 GO:0003700|GO:0006355
Trre7g00116 324 Gene3D AP2/ERF domain 135 196 IPR036955 GO:0003700|GO:0006355
Trre7g00116 324 SMART rav1_2 37 106 IPR001471 GO:0003700|GO:0006355
Trre7g00116 324 SMART rav1_2 136 200 IPR001471 GO:0003700|GO:0006355
Trre7g00116 324 FunFam AP2-like ethylene-responsive transcription factor 135 196 - -
Trre7g00116 324 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00116 Trre-Chr7 730116 736753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00116 130 202 AP2-EREBP Transcription Factor Family AT5G57390 39.506 9.08e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre7g00116 AP2 1.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00116 K09285 - gmx:100807781 419.468