Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00115 ATGGCCAAGAAATCTCATAAAACCACTTCTTCTAATTCTTCTTCAACCACCATGGTGAAACGTAAACGTAAAAGCATCCCAAGAAACTCACCTCCACAAAGAAGCTCAATTTATAGGGGTGTTACAAGACATCGTTGGACTGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATGAATCACAAAGCAAAAAAGGAAGACAAGTGTATCTAGGAGCATATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTATTGGGGCCAAGATACAATTCTCAATTTTCAAGTATCAAATTATCAAGAGGAGCTCAAAGAGATGGAGGGTCAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGTAGTGGATTTTCTAGAGGAGTCTCAAAATACAGAGGTGTTGCAAGACACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTCGGCAACAAATATTTATACCTTGGAACTTACGCTACACAAGAAGAAGCAGCCACAGCATATGACGTGGCAGCAATACAGTACAGAGGACTTAACGCTGTTACAAACTTTGATCTTAGCCGTTATAGCAACTGGTTATATCCTAAAACTCAAGACAACAATAATAATAACAACCACAATAATCAAAATTCTAGCAATAATCAAGAGCTAGATCTTAATCAAGAACTTGATGTCAGTGCCACATCAGCATCTTCGCCACTCGATCACATCTTAAAATCATCAAAATTCACGGAAATGATAGAAAAAACATTACCGGACGAAATTGAAGATAGTTACACTCCACCATCTTCTGAGTCAACTCCTCCACGTCGTACATTTCCCGAAGATATTCAAACGATTTTTGAAACACAAGATTCAAGTATCTACACTGAAAATGATCATGACATCATATTTGGTGAGTTAAGCTCAATTGATGCCCCAATTTTTCATTACGGACTTGATGCTTGA 984 0.3831 MAKKSHKTTSSNSSSTTMVKRKRKSIPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFQVSNYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDVAAIQYRGLNAVTNFDLSRYSNWLYPKTQDNNNNNNHNNQNSSNNQELDLNQELDVSATSASSPLDHILKSSKFTEMIEKTLPDEIEDSYTPPSSESTPPRRTFPEDIQTIFETQDSSIYTENDHDIIFGELSSIDAPIFHYGLDA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00115 327 ProSiteProfiles AP2/ERF domain profile. 37 103 IPR001471 GO:0003700|GO:0006355
Trre7g00115 327 MobiDBLite consensus disorder prediction 1 20 - -
Trre7g00115 327 FunFam AP2-like ethylene-responsive transcription factor 138 199 - -
Trre7g00115 327 SUPERFAMILY DNA-binding domain 138 199 IPR016177 GO:0003677
Trre7g00115 327 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700|GO:0006355
Trre7g00115 327 CDD AP2 138 199 IPR001471 GO:0003700|GO:0006355
Trre7g00115 327 Gene3D AP2/ERF domain 37 105 IPR036955 GO:0003700|GO:0006355
Trre7g00115 327 Gene3D AP2/ERF domain 138 199 IPR036955 GO:0003700|GO:0006355
Trre7g00115 327 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Trre7g00115 327 PRINTS Ethylene responsive element binding protein signature 179 199 IPR001471 GO:0003700|GO:0006355
Trre7g00115 327 Pfam AP2 domain 37 95 IPR001471 GO:0003700|GO:0006355
Trre7g00115 327 Pfam AP2 domain 138 189 IPR001471 GO:0003700|GO:0006355
Trre7g00115 327 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 233 - -
Trre7g00115 327 SUPERFAMILY DNA-binding domain 36 105 IPR016177 GO:0003677
Trre7g00115 327 MobiDBLite consensus disorder prediction 263 284 - -
Trre7g00115 327 SMART rav1_2 37 109 IPR001471 GO:0003700|GO:0006355
Trre7g00115 327 SMART rav1_2 139 203 IPR001471 GO:0003700|GO:0006355
Trre7g00115 327 MobiDBLite consensus disorder prediction 269 284 - -
Trre7g00115 327 MobiDBLite consensus disorder prediction 207 226 - -
Trre7g00115 327 FunFam AP2-like ethylene-responsive transcription factor 36 105 - -
Trre7g00115 327 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00115 Trre-Chr7 730116 736753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00115 133 205 AP2-EREBP Transcription Factor Family AT5G57390 39.506 9.22e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre7g00115 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00115 K09285 - gmx:100807781 430.639