Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00082 ATGAGAAAGGTTGTATGGCTAGCTATGAAGCACGGTGCACGGACATCAACACATATGATTACAGTGTCCATATGGCATGCTGTTGCTTCATGGACTTGGGATGCACAGGATGAAACGTGCGGGATTTGTAGGATGGCGTTTGATGGATGTTGTCCTGATTGTAAACTTCCTGGCGATGACTGTCCACTTATTTGGGGTGCATGCAATCACGCATTTCATTTGCATTGTATCTTGAAATGGGTGAATTCTCAAACCTCACAAGCACATTGCCCAATGTGCCGTCGGGAATGGCAATTTAAAGGTTGA 306 0.451 MRKVVWLAMKHGARTSTHMITVSIWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00082 101 SUPERFAMILY RING/U-box 18 100 - -
Trre7g00082 101 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 20 100 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Trre7g00082 101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 101 IPR013083 -
Trre7g00082 101 ProSiteProfiles Zinc finger RING-type profile. 51 94 IPR001841 -
Trre7g00082 101 PANTHER RING BOX 19 100 - -
Trre7g00082 101 CDD RING-H2_APC11 37 99 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Trre7g00082 101 FunFam Anaphase-promoting complex subunit 11 18 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00082 Trre-Chr7 560964 562301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00082 51 94 C3H Transcription Factor Family AT1G72220 41.304 9.05e-07 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00082 K03358 - mtr:11418690 189.889