Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00079 ATGTTTGATTCTGGTTACAAGTCACAATATATTGGAGGTCAAAAGGAGAAATTTGTGAGGTTGGATGATTTGGATTCCAATTTGAATACGCCGTCTAGCTCAAGAGGGATGAAGAAATTAAGATTTAATTTAGATTCATTGCCTATTCCTTTTCGCGATCCTGGATTGATCGCGAAGCGATATTTACGACGATACTTCATTTTTGACTTCTGGTCTGTACTGCCATTGCCACAGGCTGTAGTGTGGAAATATCTTTATAGTTCAAGACAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAAAATGCATTGCTCGGTGCTATGTACTATTTGATCTGGTATATGCTTGCTAGCCATATAACAGAAGTCTTTCCCAAATTTTGTTACTGTCTATGGTGGGGCCTTCAGAATTTGAGTACACTTGGTCAGGGGCTTCTAACTAGTACCTACCCTGGAGAGGTTATGTTTTCCATTGTAATAGCTATTATGGGGCTTGTGCTTTTTTCTCTTTTGATTGGGAACATGCAGACCTACCTTAATTCAATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGCGACTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGAGCTAAGGGAAAGAGTCAGACGTTACGACCAATACAAGTGGCTGAACACCCGAGGGGTCGATGAAGAAAGCTTGGTTCAGAGTCTTCCAAAAGATCTCAGAAGAGATATCAAACGACATCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTCTTTGCTAACATGGATGAACGCTTGCTTGATGCGATATCTGCATGGAGGAAGCATTTAAGGAGAAAACGCAGAAAAGAAGAGGAAGAAGAATATTTTGAATCTGATTATGGAGGAAGTGATGATCCTTCTACGGCTTTGGTTCCACGTGCTGAAAGTTCGTCAAGATTTGGATTCAATACAACAATCTATGCTTCTCGGTTTGCTGCTAATCTTCGTGGTCATAGACGTCGAGTTCCAAGTTCAAGCGACCTGGTGAACATTCCAAAGCCCACGGAACCTGACTTTAGTGCTCTTGATAATGAAGAGTGA 1080 0.4185 MFDSGYKSQYIGGQKEKFVRLDDLDSNLNTPSSSRGMKKLRFNLDSLPIPFRDPGLIAKRYLRRYFIFDFWSVLPLPQAVVWKYLYSSRQVKKTAGVFSENALLGAMYYLIWYMLASHITEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVLFSLLIGNMQTYLNSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAISAWRKHLRRKRRKEEEEEYFESDYGGSDDPSTALVPRAESSSRFGFNTTIYASRFAANLRGHRRRVPSSSDLVNIPKPTEPDFSALDNEE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00079 359 Pfam Ion transport protein 122 184 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre7g00079 359 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 121 270 - -
Trre7g00079 359 MobiDBLite consensus disorder prediction 330 359 - -
Trre7g00079 359 Gene3D - 100 186 - -
Trre7g00079 359 Gene3D Helix hairpin bin 187 248 - -
Trre7g00079 359 SUPERFAMILY Voltage-gated potassium channels 81 220 - -
Trre7g00079 359 FunFam Cyclic nucleotide-gated ion channel 1 184 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00079 Trre-Chr7 545613 549301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00079 270 359 Ion Channels AT1G19780 47.475 1.58e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00079 K05391 - gmx:100810453 277.33