Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00061 ATGATATTTTTGATATGCAGTGAGGAAGCTGTTGCTGTAGCTGAGCCTGTTGCCGTTGCCGCTGCTGGAGTTCCAGGCGAGCCAATGGACATCATGACTGCCTTGCAACTCGTGCTTAGGAAGTCTTTGGCTTACGGAGGTCTTGCACGTGGCCTCCACGAAGGTGCAAAAGTAATTGAGAAGCATGCTGGACAACTCTGTGTTCTTGCAGAGGATTGCGACCAACCTGACTATGTTAAACTTGTCAAGGCTCTTTGTGCTGAGCACAATGTTAGTCTGCTGACAGTTCCCAGTGCAAAGACACTTGGAGAATGGGCTGGTTTGTGCAAGATTGACTCAGAGGGAAAAGCTAGGAAAGTAACTGGCTGCTCCTGTGTTGTTGTCAAGGATTTTGGCGAGGAACATGAAGCCTACAATGTTGTTCTGCAGCACGTGAAAGCTCAGTGA 447 0.4855 MIFLICSEEAVAVAEPVAVAAAGVPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00061 148 FunFam 40S ribosomal protein S12 14 148 - -
Trre7g00061 148 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 34 127 IPR004038 -
Trre7g00061 148 Gene3D - 15 148 IPR029064 -
Trre7g00061 148 ProSitePatterns Ribosomal protein S12e signature. 34 52 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre7g00061 148 SUPERFAMILY L30e-like 28 146 IPR029064 -
Trre7g00061 148 PRINTS Ribosomal protein S12E family signature 118 131 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre7g00061 148 PRINTS Ribosomal protein S12E family signature 93 114 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre7g00061 148 PRINTS Ribosomal protein S12E family signature 38 51 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre7g00061 148 PRINTS Ribosomal protein S12E family signature 52 68 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre7g00061 148 PANTHER 40S RIBOSOMAL PROTEIN S12 25 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00061 Trre-Chr7 425298 426014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00061 27 148 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 72.951 7.96e-65 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00061 K02951 - gmx:100786733 255.758