Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00060 ATGTCAGGTGAGGAAGCTGTTGCTGTAGCTGAGCCTGTTGCCGTTGCCGCTGCTGGAGTTCCAGGCGAGCCAATGGACATCATGACTGCCTTGCAACTCGTGCTTAGGAAGTCTTTGGCTTACGGAGGTCTTGCACGTGGCCTCCACGAAGGTGCAAAAGTAATTGAGAAGCATGCTGGACAACTCTGTGTTCTTGCAGAGGATTGCGACCAACCTGACTATGTTAAACTTGTCAAGGCTCTTTGTGCTGAGCACAATGTTAGTCTGCTGACAGTTCCCAGTGCAAAGACACTTGGAGAATGGGCTGGTTTGTGCAAGATTGACTCAGAGGGAAAAGCTAGGAAAGTAACTGGCTGCTCCTGTGTTGTTGTCAAGGATTTTGGCGAGGAACATGAAGCCTACAATGTTGTTCTGCAGCACGTGAAAGCTCAGTGA 435 0.4966 MSGEEAVAVAEPVAVAAAGVPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00060 144 SUPERFAMILY L30e-like 24 142 IPR029064 -
Trre7g00060 144 PANTHER 40S RIBOSOMAL PROTEIN S12 21 143 - -
Trre7g00060 144 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 30 123 IPR004038 -
Trre7g00060 144 PRINTS Ribosomal protein S12E family signature 48 64 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre7g00060 144 PRINTS Ribosomal protein S12E family signature 89 110 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre7g00060 144 PRINTS Ribosomal protein S12E family signature 114 127 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre7g00060 144 PRINTS Ribosomal protein S12E family signature 34 47 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre7g00060 144 FunFam 40S ribosomal protein S12 10 144 - -
Trre7g00060 144 ProSitePatterns Ribosomal protein S12e signature. 30 48 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre7g00060 144 Gene3D - 11 144 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00060 Trre-Chr7 424562 426014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00060 1 144 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 69.444 4.15e-65 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00060 K02951 - gmx:100786733 255.758