Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00053 ATGGATAGAAAACACAAAAATGAATCATCTCCTCAACTTGTACTTGATTTAAGTCTCTCTAGCAAAGATTCTTGTGATGATGAATCAAAGCCAGAACTCAACCTTCTCAATTGTTTCCATGCAAATTTATCAGAAAGTTCTTCAGAATCTAGTCATGATCCAAATGAACTTGATCCAAGAGTTTTCTCATGCAACTATTGTCAGAGAAAATTTTATAGTTCTCAAGCACTCGGAGGACACCAGAATGCACATAAGCGCGAAAGAACTTTGGCGCGAAGAGGCTATACAACTAGCATGACTTCTTCTATGGCTTCTTATGGCTTATGCAGCAAATCACTTGGCATTCAAGTGCATTCTATGATTAACAAACCTTCTTACCAAACACCCTTTTTTGGATTTTGTTCAAATGGCCAAAATGGTTGGAAAAGACAGAATTTTGATTCACAGCCTGCAATTAGAAAGCTTCCATCTGGAAATTTTCATTTGAGGAATGAAACTGAACCATCCTTTGGTAATAACATTTCAAAGGTAGCCATGTTTCCAAAAGGGTTTGTGAATGAAGGATTTGGAAGTTACTTATTGGATAAAAGCACTTCTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAATCTTGACTTGTCTCTTAAGCTCTAA 654 0.3639 MDRKHKNESSPQLVLDLSLSSKDSCDDESKPELNLLNCFHANLSESSSESSHDPNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYTTSMTSSMASYGLCSKSLGIQVHSMINKPSYQTPFFGFCSNGQNGWKRQNFDSQPAIRKLPSGNFHLRNETEPSFGNNISKVAMFPKGFVNEGFGSYLLDKSTSHLKSKQEKLQNLDLSLKL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00053 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Trre7g00053 217 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 217 IPR044246 GO:0009788
Trre7g00053 217 FunFam Zinc finger protein 2 40 107 - -
Trre7g00053 217 SUPERFAMILY beta-beta-alpha zinc fingers 59 89 IPR036236 -
Trre7g00053 217 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Trre7g00053 217 Gene3D Classic Zinc Finger 41 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00053 Trre-Chr7 380186 380839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00053 2 217 C2H2 Transcription Factor Family AT5G10970 38.961 4.13e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g00053 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00053 - - mtr:25491181 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00053 7 380186 380839 Trre7g00053 7 380186 380839 ECH