Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00040 ATGAAGCCGATTCAACTTCCACCTCCAACCGCCACCGGCTCAGCCACAGCCTCAGGTTCTCCCAACCGTCCTCAGCGCCGCCGTAGAGACCTAACTCTTCCGCTACCACAGCGTGACACAAACCTAGCGGTTCCGCTTCCCCTTCCTCCGTCCGGCAGCGGAAGTGGTGGAAGCGGCAGTGGAGGAAACGGAAGCGGAAACGGAAACAACGGTGGAGGAAACGGAGGATCAGCGACTCAACAACTGGTGATTCCGTTCGGGGAGCTTGAAAGGTTGAACCGGATCGGAAGCGGTAGCGGAGGAACGGTTTATAAAGTAGTTCACAGAATCAACGGTCGCGCTTACGCGTTGAAGGTGATTTACGGACATCACGAGGAATCTGTTCGTCGTCAGATCCATAGAGAAATCCAGATCTTAAGAGATGTAGATGATCCAAACGTTGTCAAGTGTCACGAGATGTACGATCACAACGCTGAAATTCAGGTTCTGTTAGAATACATGGACGGTGGATCTCTCGAAGGGAAACACATCCCTCAGGAGAATCAGCTTGCTGACGTGGCACGTCAGATCCTCCGTGGACTCGCTTACCTCCACCGTCGTCACATCGTTCACCGTGACATCAAACCGTCGAATCTGTTGATAAATTCACGGAAACAGGTTAAGATCGCTGACTTCGGTGTAGGTAGAATTCTGAATCAAACCATGGATCCGTGTAATTCATCGGTAGGAACGATTGCTTACATGTCACCGGAGAGGATAAACACCGATATCAACGACGGACAATATGATGCTTACGCTGGTGATATATGGAGTTTAGGAGTGAGTATATTGGAGTTTTATATGGGAAGATTTCCGTTTGCGGTTGGTAGACAAGGTGATTGGGCGAGTTTGATGTGTGCTATTTGTATGTCACAACCACCGGAAGCTCCTACAACTGCTTCACCGGAGTTTAGGGATTTTGTTTCACGGTGTTTGCAGAGAGATCCGTCGAGGAGATGGACTGCTTCTCGGTTGCTTTCGCATCCTTTTCTTGTTAGAACAGTTTCTCATCATAATCAGATTCCACCAAATCTTCATCAACTACTTCCTCCACCAAGGCCTCTTTCATCTTAG 1113 0.4906 MKPIQLPPPTATGSATASGSPNRPQRRRRDLTLPLPQRDTNLAVPLPLPPSGSGSGGSGSGGNGSGNGNNGGGNGGSATQQLVIPFGELERLNRIGSGSGGTVYKVVHRINGRAYALKVIYGHHEESVRRQIHREIQILRDVDDPNVVKCHEMYDHNAEIQVLLEYMDGGSLEGKHIPQENQLADVARQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPTTASPEFRDFVSRCLQRDPSRRWTASRLLSHPFLVRTVSHHNQIPPNLHQLLPPPRPLSS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00040 370 MobiDBLite consensus disorder prediction 53 79 - -
Trre7g00040 370 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 57 346 - -
Trre7g00040 370 Pfam Protein kinase domain 90 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g00040 370 FunFam Mitogen-activated protein kinase 2 169 355 - -
Trre7g00040 370 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Trre7g00040 370 ProSiteProfiles Protein kinase domain profile. 89 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g00040 370 Gene3D Transferase(Phosphotransferase) domain 1 170 356 - -
Trre7g00040 370 SMART serkin_6 89 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g00040 370 MobiDBLite consensus disorder prediction 1 79 - -
Trre7g00040 370 CDD PKc_MAPKK_plant_like 88 344 - -
Trre7g00040 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Trre7g00040 370 Gene3D Phosphorylase Kinase; domain 1 76 168 - -
Trre7g00040 370 SUPERFAMILY Protein kinase-like (PK-like) 86 364 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00040 Trre-Chr7 260186 261298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00040 1 360 MAP Kinase Kinase Gene Family AT1G51660 69.167 1.98e-169 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre7g00040 Pkinase 5.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00040 K13413 - gmx:100786390 603.594