Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06172 ATGATCTCACCCACTCGCCACAATATGTCTAGATCAGCTAGGAGGAAGAAAAACAGTGGTCATTGGTGGTTGTCATCAATATCATGGATGAAGAAGGAGGTTGACTCATATGCCACGACTCATCATACTCAGCTCTCTTCTGATAGTCCTTATTACAAGGGTCTCACTGATCAATCTCTTGCTATTACTCATGAAGACTATGAAGATGTTGACAACACCACCGATATCTCTTCACCACTACGACCTCTCCTCCTTTCATCATCCCCCCACAGTAGTCCTTACTACAAAGGTCTTACCGATTATTCTCTTGTAGTCGATGCCTCTTGGGCCAGTCATCATTCACATCCTCATCTCCATCCCCAGCACAACTCACCCCTTTCTTGTTACCACGACTCAAGTCCATACTATAGAGGTCTTATTGCTCTTCCTGTTCCTACCTCCCCCTCCTCTCTCTTCTCTCTCAACATCAATTTCAAAACCACCACTGAAGCCGCCCAACCATCAACTCATGATTTTGTTGTCTTTTTAAGTCCAGAAGATCAGTCACTGATGGTAACAGAGCCAGGAGCAACTTTAGATGATGAGATGGAGTTGATCTATCCTGATATCCAAGGGAAGCCTTTGAGGGTTAAAGATAAGTTGTCATCACAAGCAACTTTGGAAGAGATAGACGATGTTATTGAAGGGGGGAAGCCTTTGAGGGTTAATTATGAATCAGAAACAGTTCCAGAGAAAACAATTTTTGAAGATGTTGTGTTGTTGGTTGAAGAGCATAAGAGGAAGTCTTTGACTGAGAGAGTAGCATCAGATTCTGAGACAGTATTGTTACAACAAATAAATGCTGACAAAACAGATTTGGTTTTGGAGGAGGAGATGGAATTAGTCACTGAACAAGAGAAGCCATTGAGAGAGAGTCATGTATCAGAAGTTGAAAATGAGAACGTACTAATAAATATAGATTTGAAAGCGGAACTCAAAGACTTTTGGTTGGGTGGTCAAAAGACTGTTTATGAACAAACAGTGTCACTGGAATTACCTTGTGAGCACAAGTTGAAGGACACAACTGTGGAAGGAATTCTGTATGAGTATCTGTGGGCAACCAAATACCAGCCCAAGACCTTGGCTGACTTCATCTGTAACAGAGATAAAGCACTTCAGCTGAAAGAATTGGTACAGGGTGGGTGCGGCTGTAATCATTTTATATTCGAAGGACCCCCAAATGTCGGAAAAAGATCCATGATACGGGCTATGCTTCGAGAGGTATTCGGCGCTGACGGAGTTCAGGTCACAGAAGAATATAAAGACTTCAGCTTGAAGGGAGAAATGGTTGAAAATCTGCAACTGCGCCTAAATAAATCACTCCATCATGTTGAGGTGAACCTGTCAGAGGCAAAGGGATATGAAAAACATGTGATTTCTGAGTTATTCAAGGAAACTTATGGTAAAGTGATAAATAGCTCATTGCCTTGTAGCCCAGAAAACTGTCAAGCAATCATTTTGTATGATGCGGAGAAGCTATCATTAGAATCGGTGTTGTATATCAAGTGGATGGTAGAAAAGTATAAAGGGTGTAATAAACTGTTCTTTTGCTGCTCTGATGAATCAAGGCTACAACCTATCCAATCACATTGCACCACTGTCCGCCTTTCATCACCATCAACACAACAGATTGTGAAGATTTTGGAATGGATTGTAGAAGAAGAAGGAATAAAATTATCACGCGAGTCAATCAAGAAGATAATTTTGAGGTCCAAAAACAATCTCCGTCAAGCCATTCGTTCATTGGAGGCCACTTACCGGCACAAGAATGCCCTCAACGAGGATGAGTTCATTTTAACTGGATGGGAGGACGATATTTTGAATATTGCTAAAAATATAATCAGAGAGCAGAGTCCAAGACAGTTGTATGCCATTCGTAGAAAGCTTCAAAGTCTTATGATTCATGATGTTCCTCCTGAGTTTATCTACAAGTCTTTGGTAGACAACTTAACGAGTCTAGTTGACGGCTCACTATGCTCAGGGGTTTCCAATCTTCACAAGGAGTACACCAAAGGTAGTGAAATCGAATTTGAAAGTGTGAAACATCATGCTCAAAACAAACAAGGAGGATCAGATGAAAGGAGCACTGAACTAACAAAAAAGAATGCAATGAACTACTTAAAAGTTGAAGAATTCATAGCAAAATTCATGAGCTGGTACAAGAATTCATGTAAAAGTGATGATCATGTGCAACTTATTGCTGGGCCAGGAACATAG 2256 0.4087 MISPTRHNMSRSARRKKNSGHWWLSSISWMKKEVDSYATTHHTQLSSDSPYYKGLTDQSLAITHEDYEDVDNTTDISSPLRPLLLSSSPHSSPYYKGLTDYSLVVDASWASHHSHPHLHPQHNSPLSCYHDSSPYYRGLIALPVPTSPSSLFSLNINFKTTTEAAQPSTHDFVVFLSPEDQSLMVTEPGATLDDEMELIYPDIQGKPLRVKDKLSSQATLEEIDDVIEGGKPLRVNYESETVPEKTIFEDVVLLVEEHKRKSLTERVASDSETVLLQQINADKTDLVLEEEMELVTEQEKPLRESHVSEVENENVLINIDLKAELKDFWLGGQKTVYEQTVSLELPCEHKLKDTTVEGILYEYLWATKYQPKTLADFICNRDKALQLKELVQGGCGCNHFIFEGPPNVGKRSMIRAMLREVFGADGVQVTEEYKDFSLKGEMVENLQLRLNKSLHHVEVNLSEAKGYEKHVISELFKETYGKVINSSLPCSPENCQAIILYDAEKLSLESVLYIKWMVEKYKGCNKLFFCCSDESRLQPIQSHCTTVRLSSPSTQQIVKILEWIVEEEGIKLSRESIKKIILRSKNNLRQAIRSLEATYRHKNALNEDEFILTGWEDDILNIAKNIIREQSPRQLYAIRRKLQSLMIHDVPPEFIYKSLVDNLTSLVDGSLCSGVSNLHKEYTKGSEIEFESVKHHAQNKQGGSDERSTELTKKNAMNYLKVEEFIAKFMSWYKNSCKSDDHVQLIAGPGT 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06172 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 606 IPR027417 -
Trre6g06172 751 CDD HLD_clamp_RFC 552 608 - -
Trre6g06172 751 Gene3D - 614 733 - -
Trre6g06172 751 SUPERFAMILY post-AAA+ oligomerization domain-like 614 675 IPR008921 GO:0003677|GO:0006260
Trre6g06172 751 Gene3D - 553 613 - -
Trre6g06172 751 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 365 698 - -
Trre6g06172 751 Coils Coil 585 605 - -
Trre6g06172 751 Gene3D - 363 552 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06172 Trre-Chr6 61308739 61313304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06172 364 735 Core DNA Replication Machinery Family AT5G27740 30.851 1.08e-48 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06172 K10756 - gmx:102664389 624.009