Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06171 ATGAAGGTACCTAGCCCGACACAGAAGCAATCTGTTGGGGATCGTCTCATGATCTCACCCACTCGCCACAATATGTCTAGATCAGCTAGGAGGAAGAAAAACAGTGGTCATTGGTGGTTGTCATCAATATCATGGATGAAGAAGGAGGTTGACTCATATGCCACGACTCATCATACTCAGCTCTCTTCTGATAGTCCTTATTACAAGGGTCTCACTGATCAATCTCTTGCTATTACTCATGAAGACTATGAAGATGTTGACAACACCACCGATATCTCTTCACCACTACGACCTCTCCTCCTTTCATCATCCCCCCACAGTAGTCCTTACTACAAAGGTCTTACCGATTATTCTCTTGTAGTCGATGCCTCTTGGGCCAGTCATCATTCACATCCTCATCTCCATCCCCAGCACAACTCACCCCTTTCTTGTTACCACGACTCAAGTCCATACTATAGAGGTCTTATTGCTCTTCCTGTTCCTACCTCCCCCTCCTCTCTCTTCTCTCTCAACATCAATTTCAAAACCACCACTGAAGCCGCCCAACCATCAACTCATGATTTTGTTGTCTTTTTAAGTCCAGAAGATCAGTCACTGATGGTAACAGAGCCAGGAGCAACTTTAGATGATGAGATGGAGTTGATCTATCCTGATATCCAAGGGAAGCCTTTGAGGGTTAAAGATAAGTTGTCATCACAAGCAACTTTGGAAGAGATAGACGATGTTATTGAAGGGGGGAAGCCTTTGAGGGTTAATTATGAATCAGAAACAGTTCCAGAGAAAACAATTTTTGAAGATGTTGTGTTGTTGGTTGAAGAGCATAAGAGGAAGTCTTTGACTGAGAGAGTAGCATCAGATTCTGAGACAGTATTGTTACAACAAATAAATGCTGACAAAACAGATTTGGTTTTGGAGGAGGAGATGGAATTAGTCACTGAACAAGAGAAGCCATTGAGAGAGAGTCATGTATCAGAAGTTGAAAATGAGAACGTACTAATAAATATAGATTTGAAAGCGGAACTCAAAGACTTTTGGTTGGGTGGTCAAAAGACTGTTTATGAACAAACAGTGTCACTGGAATTACCTTGTGAGCACAAGTTGAAGGACACAACTGTGGAAGGAATTCTGTATGAGTATCTGTGGGCAACCAAATACCAGCCCAAGACCTTGGCTGACTTCATCTGTAACAGAGATAAAGCACTTCAGCTGAAAGAATTGGTACAGGGTGGGTGCGGCTGTAATCATTTTATATTCGAAGGACCCCCAAATGTCGGAAAAAGATCCATGATACGGGCTATGCTTCGAGAGGTATTCGGCGCTGACGGAGTTCAGGTCACAGAAGAATATAAAGACTTCAGCTTGAAGGGAGAAATGGTTGAAAATCTGCAACTGCGCCTAAATAAATCACTCCATCATGTTGAGGTGAACCTGTCAGAGGCAAAGGGATATGAAAAACATGTGATTTCTGAGTTATTCAAGGAAACTTATGGTAAAGTGATAAATAGCTCATTGCCTTGTAGCCCAGAAAACTGTCAAGCAATCATTTTGTATGATGCGGAGAAGCTATCATTAGAATCGGTGTTGTATATCAAGTGGATGGTAGAAAAGTATAAAGGGTGTAATAAACTGTTCTTTTGCTGCTCTGATGAATCAAGGCTACAACCTATCCAATCACATTGCACCACTGTCCGCCTTTCATCACCATCAACACAACAGATTGTGAAGATTTTGGAATGGATTGTAGAAGAAGAAGGAATAAAATTATCACGCGAGTCAATCAAGAAGATAATTTTGAGGTCCAAAAACAATCTCCGTCAAGCCATTCGTTCATTGGAGGCCACTTACCGGCACAAGAATGCCCTCAACGAGGATGAGTTCATTTTAACTGGATGGGAGGACGATATTTTGAATATTGCTAAAAATATAATCAGAGAGCAGAGTCCAAGACAGTTGTATGCCATTCGTAGAAAGCTTCAAAGTCTTATGATTCATGATGTTCCTCCTGAGTTTATCTACAAGTCTTTGGTAGACAACTTAACGAGTCTAGTTGACGGCTCACTATGCTCAGGGGTTTCCAATCTTCACAAGGAGTACACCAAAGGTAGTGAAATCGAATTTGAAAGTGTGAAACATCATGCTCAAAACAAACAAGGAGGATCAGATGAAAGGAGCACTGAACTAACAAAAAAGAATGCAATGAACTACTTAAAAGTTGAAGAATTCATAGCAAAATTCATGAGCTGGTACAAGAATTCATGTAAAAGTGATGATCATGTGCAACTTATTGCTGGGCCAGGAACATAG 2304 0.411 MKVPSPTQKQSVGDRLMISPTRHNMSRSARRKKNSGHWWLSSISWMKKEVDSYATTHHTQLSSDSPYYKGLTDQSLAITHEDYEDVDNTTDISSPLRPLLLSSSPHSSPYYKGLTDYSLVVDASWASHHSHPHLHPQHNSPLSCYHDSSPYYRGLIALPVPTSPSSLFSLNINFKTTTEAAQPSTHDFVVFLSPEDQSLMVTEPGATLDDEMELIYPDIQGKPLRVKDKLSSQATLEEIDDVIEGGKPLRVNYESETVPEKTIFEDVVLLVEEHKRKSLTERVASDSETVLLQQINADKTDLVLEEEMELVTEQEKPLRESHVSEVENENVLINIDLKAELKDFWLGGQKTVYEQTVSLELPCEHKLKDTTVEGILYEYLWATKYQPKTLADFICNRDKALQLKELVQGGCGCNHFIFEGPPNVGKRSMIRAMLREVFGADGVQVTEEYKDFSLKGEMVENLQLRLNKSLHHVEVNLSEAKGYEKHVISELFKETYGKVINSSLPCSPENCQAIILYDAEKLSLESVLYIKWMVEKYKGCNKLFFCCSDESRLQPIQSHCTTVRLSSPSTQQIVKILEWIVEEEGIKLSRESIKKIILRSKNNLRQAIRSLEATYRHKNALNEDEFILTGWEDDILNIAKNIIREQSPRQLYAIRRKLQSLMIHDVPPEFIYKSLVDNLTSLVDGSLCSGVSNLHKEYTKGSEIEFESVKHHAQNKQGGSDERSTELTKKNAMNYLKVEEFIAKFMSWYKNSCKSDDHVQLIAGPGT 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06171 767 SUPERFAMILY post-AAA+ oligomerization domain-like 630 691 IPR008921 GO:0003677|GO:0006260
Trre6g06171 767 CDD HLD_clamp_RFC 568 624 - -
Trre6g06171 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 622 IPR027417 -
Trre6g06171 767 Gene3D - 569 629 - -
Trre6g06171 767 Gene3D - 630 749 - -
Trre6g06171 767 MobiDBLite consensus disorder prediction 1 30 - -
Trre6g06171 767 Gene3D - 379 568 IPR027417 -
Trre6g06171 767 Coils Coil 601 621 - -
Trre6g06171 767 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 381 713 - -
Trre6g06171 767 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06171 Trre-Chr6 61308691 61313304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06171 380 751 Core DNA Replication Machinery Family AT5G27740 30.851 1.68e-48 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06171 K10756 - gmx:102664389 628.246