Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06169 ATGGTGTTGGTGGGTGTTTGCGGAAAGGCGGTGCTGTTTAGTATCGGAATCAGAGTCAGACCCAAACCCACCGTACACTCTGTCTTTATCGTTTCCAATTCCACCGCCGATAGCCAAGACACAACAGCAGCAGCAACAACAGCAACAGCAACAACCACTCCGACGACGAGGAGTTTCGGAAGACTAAAAGTCCAGAAAGTAAAGGCTCTCATCCACAGAACGAAGCAAAACACAAGACGCGAACAAGTAATAGTAGAAGAAGAAGATGACCGCAGTACTTCTCAAAGACAACGACGACATTCTCCTCCTGATTCAAGAGGAGGATGGGGAGATAATAAGGTTACTCAGACTCAACCATTGCCAGAGGCTGATACCAACTTTTCCAGTCTCAAATCATTTAAAGACATTGGATGCGCTGATTTTATGATTCAATCACTTCATAACCTCTCTTTAACACGCCCTTCCAATATACAAGCCATGTCTTTTCCTCCCATTATTGCTCGAAAGTCTTGTATCATTGCTGACCAGAGTGGTTCTGGAAAGACATTAGCTTATCTTCTACCAATCATTCAAAGTCTCAAACAACAAGAACAAGAACAACAACAACCACCTCATCATAATTCACAATCTCCTACTGTTCTTATACTCGCTCCCACATCAGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCATTGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACTGGAGGCTTTCGACAAAAAACTCAACTCGATAGTTTAAAGCAGGGTGTTGATGTCTTAATAGCTACACCTGGCCGTTTTCTTTTCCTCATACAGGAAGGTTTCTTGCACTTAACAAATCTAACATGTGCTGTGTTGGATGAGGTAGACATACTCTTTGGGGATGATGACTTCGAAAAGGCTCTGCAATGCTTGATTAGTTCTTCGCCAGTTGACACACAATATCTATTTGTGACTGCAACTCTACCAAAAAATGTTTACAGCAAACTGGTTGAAGTTTTTCCTGATTGTGAAATGGTCATGGGACCTAGTATGCATCGAATAAGCTCTCGCCTTGAAGAGATAATAATAGATTGCAGTGGGGAAGATGGACAAGAAAAAACTCTTGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGAAGCTTGCAGAGAAGAATCGTGTCCCAAGAACTATTGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCATTAAAGCGTTTTGATAGAAAGGGAATTCGCATGCAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGAAAGAGTTTAGTCGTTCTCCATCAAAAGAAGTGTCCCAATTTATGATATGCACGGACAGAGCATCGCGGGGAATCGACTTCACTAGAGTGGATCATGTAATACTTTTTGACTACCCACGTGATCCAAGCGAATATGTACGGCGTGTTGGAAGAACCGCAAGAGGTGCCAGGGGACAGGGCAAGGCATTTATCTTTGTAGTTGGCAAGCAAGTATCCCTTGCAAACATAATAATGGAAAGGAATCGGAAGGGTCATCCACTGCACGATGTACCTTCGGTTTATGAGTATTGA 1617 0.4224 MVLVGVCGKAVLFSIGIRVRPKPTVHSVFIVSNSTADSQDTTAAATTATATTTPTTRSFGRLKVQKVKALIHRTKQNTRREQVIVEEEDDRSTSQRQRRHSPPDSRGGWGDNKVTQTQPLPEADTNFSSLKSFKDIGCADFMIQSLHNLSLTRPSNIQAMSFPPIIARKSCIIADQSGSGKTLAYLLPIIQSLKQQEQEQQQPPHHNSQSPTVLILAPTSELASQVLDNCRSLSKSGVPFKSMVVTGGFRQKTQLDSLKQGVDVLIATPGRFLFLIQEGFLHLTNLTCAVLDEVDILFGDDDFEKALQCLISSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMVMGPSMHRISSRLEEIIIDCSGEDGQEKTLDTAFLNKKAALLKLAEKNRVPRTIVFCNKIETCRKVENALKRFDRKGIRMQVLPFHAAMTQESRLASMKEFSRSPSKEVSQFMICTDRASRGIDFTRVDHVILFDYPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLANIIMERNRKGHPLHDVPSVYEY 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06169 538 SMART helicmild6 408 498 IPR001650 -
Trre6g06169 538 MobiDBLite consensus disorder prediction 73 126 - -
Trre6g06169 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 538 IPR001650 -
Trre6g06169 538 SMART ultradead3 150 360 IPR014001 -
Trre6g06169 538 MobiDBLite consensus disorder prediction 110 126 - -
Trre6g06169 538 Pfam Helicase conserved C-terminal domain 381 497 IPR001650 -
Trre6g06169 538 CDD DEADc 142 331 - -
Trre6g06169 538 Gene3D - 74 345 IPR027417 -
Trre6g06169 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 345 IPR014001 -
Trre6g06169 538 Pfam DEAD/DEAH box helicase 156 331 IPR011545 GO:0003676|GO:0005524
Trre6g06169 538 CDD SF2_C_DEAD 357 508 - -
Trre6g06169 538 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 58 535 - -
Trre6g06169 538 MobiDBLite consensus disorder prediction 74 106 - -
Trre6g06169 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 509 IPR027417 -
Trre6g06169 538 Gene3D - 351 530 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06169 Trre-Chr6 61301004 61303856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06169 122 508 Eukaryotic Initiation Factors Gene Family AT3G19760 26.873 3.12e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06169 K13179 - gmx:100780849 675.626