Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06148 ATGACAGTGAAAGAAAGATGTATTTTGGTGGGAATTAGAATTGATAGCCATAGCAGACATGTTCTCAATTGGGCTATAGTCAAAGTTGCTCAACCCGGTGATTCTGTTATAGCAATCCATGTTGTTACAACTCCAGATCATGTTTGTGAAAGCAAGGCCTTGGTAGATGATTATTTAGAGGTTTATGAAGGGTTATGCGATGCGAAAAAGGTAGCTCTCTCTGTTCATATCTTCAAAGGAAGATCTATTCGAAATATTCTCCTTAGAGAAGCAAAAAACAGTGGTGCTATTGCTCTAGTGGTAGGGGGCGGAGCTTCAACGGCTAAATATTGCGCAAAACGACTACCAGACAGCACCGATGTTATCGGTATCCAGGATGCACGAATTGTGTTCCAAAGGTGCACCGATAATAAACAACTAATAGGTGGTGTTATAGATGATCCAAGACCAAGTCTTATTAGCAAGGTGGTCCAGTCTGCATTTGAAGACAACTTAGGGAATGAGAAATCAAGAAGCCAACAAGATAATACAAAATTGGAGGAAGAATCATTTAAAGAAGAGATGAATGTGTCATCAAGATTATCAACATCGCAGAAACTTGGATGGCCGCTTCTGCGCAGGGCGCATACAGAAATGTCGAGGGACATGTCTGTTGTACAATGGGCAATGAACTTACCAGATCGCTCAACGCACATTAACTCTCAAATTAAAGACCAGAGCTATAGAAAAAGTAATAGTTTCAATAGCTGCAAGTGGTTCATCTTTGAGGTTCTTGATTCTTGCACTTGTCAATTCTCTGAAGAAAATGTGATTGGGATTGGAGGGAGCAATCGTGTGTACAAAGGAACCCTCCCCGATGGAAAGCCGGTAGCAGTTAAAGTTATGCAGTCGTCAAAACAAGCCTTCAAAGATTTTGCACTTGAAGTGGAAATAATGTCCTCATTGAACCACACATCCATTGCCCCTCTACTTGGAATTTGCATCAAGGACGAGACTTTGATATCTGTTTATGATTATTTTCCGCAAGGAACCTTGGACCAAAATCTACGCGGTAAGAACAAGGATGGATCTAAGTTGTCATGGGAACACAGATTTAAGATAGCAGTTGGAATTGGTGAAGCACTGAATTACCTGCACAATCAAACCTTCAAGCCTATTATACATAGAGATGTCAAGTCTTCCAACATTCTTCTTTCCCACTGGTTTGAGCCACATTTATCTGATTTTGGACTTGCCATGTGGGGACCAACAAGTTCATCTTTTGTGATACAAGATGATGTGGTAGGAAGCTTTGGTTATCTTGCACCAGAATATTTCATGTATGGAAAGGTCAGTGACAAAATAGATGTATATGCCTTTGGTGTAGTCCTACTTGAACTTATATCAGGGAGGGAACCAATTGACTCCAAAACATTCAAAGAACATGAGAGTTTGGTCACATGGGCAAAACCAATTTTAGAGAGTGGGGATGTTAAAAGCTTATTGGATCCAAAGTTGGAAGGGAAGTTTGATATAGCCCAAATGAACAAAATGGTTCTGGCAGCATCTCTATGCATTACACAATCTGCACGTCTTCGTCCTACGATGAATCAGGTACTGAAAATCTTAAAAGGATGTGATGAGAAAGCCGGAAACTTATTTAAGCCGCACAAGGGTGATCATGATCATTCGGAAAATCAAGAAAATATTGATGATGAAGTCTATCCAAATTCAAGTGCAGAATTGCATTTGAGCCTTGCATTACTTGATGTTGACAATGATACTGCATCATATAGTAGTATAGAGAACAGCAATAATAGTGAAAATTTGAAAGAACCATGGAGCAGATCATCTAGTTTCAATTAA 1845 0.3967 MTVKERCILVGIRIDSHSRHVLNWAIVKVAQPGDSVIAIHVVTTPDHVCESKALVDDYLEVYEGLCDAKKVALSVHIFKGRSIRNILLREAKNSGAIALVVGGGASTAKYCAKRLPDSTDVIGIQDARIVFQRCTDNKQLIGGVIDDPRPSLISKVVQSAFEDNLGNEKSRSQQDNTKLEEESFKEEMNVSSRLSTSQKLGWPLLRRAHTEMSRDMSVVQWAMNLPDRSTHINSQIKDQSYRKSNSFNSCKWFIFEVLDSCTCQFSEENVIGIGGSNRVYKGTLPDGKPVAVKVMQSSKQAFKDFALEVEIMSSLNHTSIAPLLGICIKDETLISVYDYFPQGTLDQNLRGKNKDGSKLSWEHRFKIAVGIGEALNYLHNQTFKPIIHRDVKSSNILLSHWFEPHLSDFGLAMWGPTSSSFVIQDDVVGSFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPIDSKTFKEHESLVTWAKPILESGDVKSLLDPKLEGKFDIAQMNKMVLAASLCITQSARLRPTMNQVLKILKGCDEKAGNLFKPHKGDHDHSENQENIDDEVYPNSSAELHLSLALLDVDNDTASYSSIENSNNSENLKEPWSRSSSFN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06148 614 Gene3D Transferase(Phosphotransferase) domain 1 340 564 - -
Trre6g06148 614 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 235 339 - -
Trre6g06148 614 ProSiteProfiles Protein kinase domain profile. 265 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g06148 614 FunFam Putative receptor-like serine/threonine-protein kinase 340 551 - -
Trre6g06148 614 MobiDBLite consensus disorder prediction 173 188 - -
Trre6g06148 614 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 104 - -
Trre6g06148 614 Gene3D HUPs 2 113 IPR014729 -
Trre6g06148 614 Coils Coil 162 182 - -
Trre6g06148 614 SUPERFAMILY Protein kinase-like (PK-like) 245 536 IPR011009 -
Trre6g06148 614 PANTHER OS08G0249100 PROTEIN 156 558 IPR046958 -
Trre6g06148 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Trre6g06148 614 MobiDBLite consensus disorder prediction 164 190 - -
Trre6g06148 614 CDD USP_Like 8 119 - -
Trre6g06148 614 MobiDBLite consensus disorder prediction 592 614 - -
Trre6g06148 614 SMART serkin_6 265 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g06148 614 Gene3D Phosphorylase Kinase; domain 1 227 339 - -
Trre6g06148 614 Pfam Protein kinase domain 266 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06148 Trre-Chr6 61195475 61198194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06148 226 567 Glycoside Hydrolase AT3G07070 37.752 2.70e-70 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre6g06148 Pkinase 8.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06148 - - tpra:123897148 1145.18