Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06147 ATGTCGTCAAAGCATGAAGAAGAAGATGACCTGGATCTCCTGCTTTCTCTTCAGAACGACACTGTTCTTGAAACCCCTCCCGCTTCTCCCTCTCCACTTGATGATGATGTCGACGATGATGTGTCGCCCAGACACAACAAGCAAAGGGAGAAACCCGACATGTCTGTTTTCAGAGATGCCGTTCAAGATTGCCTTCTCCACCAACCCTCTAATCCCAACCCTAACCCTAACCCTAAATCAATTACTAAACCCCCTTCCAACGGCGATATTGACAAATTCTCTGGTCTTCGCATAAGGAACCAATGTTTAACCCCTGCTGAATTTAGGGAATGTGTTCAAGACATTCGTTTTGTTCGCCTACCTGTCATCAAGAATTTGGTGAATGGGGATACTTTCTCTGGAAGTTGGGTAACTGTTGGAGTGTTGACTGAGAAAGGGATTCAGAAAACAAGTTCAAATGGGAAGAGCTACTGCATTTGGAAAATTGGCTGTTTGGATGAAAATACCGTTTCTCTTTTCTTGTTTGGAGATGCTTATCAGAGGAATTGCCACGAGCCTGCTGGAACCGTCTTTGCACTCTTCAATGCTGCTGTACGCAAGGATGCCAAGGGTAATGGTTTTTCTTTGAGTATATACTCCCCTAACCAAATTATGAAGATGGGAACATCTCTTGATTACGGAGTTTGCAAAGGGAAAAGACCAGATGGGATGGCTTGTACATTGGTCATAAATAAGCGTCAGGGAACCTATTGTAAATATCACAAATCAAAATCATCACAGAAATATTCCACAGGGCGAACTGAACTCAAGGGAGGAAACTTAAGAACGTCATTTAGGCCAAGAGATTATCTCAAGTCAGAAGGGATATACTTAGTTGACCCCCTCGCTGACAAAACAAACTTGAAAAAGTCTAAGCCGCTGAAATTGTTATCCGTCGATGGTCTCAAGAAGGCATTGAGCAATGCAGGAAAAGTAACAACAACTTCACACTCGCAAGGAATTAGATTTCTTTCTGAGGTTACAGGCAAAGCTGATCAAAAAATGATGAAAAATGAACCAAAGTCTCAAAATGAACAAAGCAAATATGCAGAGAAGAGGAAATCATCTTCTGTGAATATGGGACACTCTTCTCTCACAAGAAACCGACAGTTAGATGTAAAAAGAATAAAAACAGAGGGGCAAGGTTTGGTCGATAAAACCACAAAGAGTACGGGAAAGATGATTGAACTAGATCTTGTTAGTTCGGATGAGGACTTCTGA 1260 0.419 MSSKHEEEDDLDLLLSLQNDTVLETPPASPSPLDDDVDDDVSPRHNKQREKPDMSVFRDAVQDCLLHQPSNPNPNPNPKSITKPPSNGDIDKFSGLRIRNQCLTPAEFRECVQDIRFVRLPVIKNLVNGDTFSGSWVTVGVLTEKGIQKTSSNGKSYCIWKIGCLDENTVSLFLFGDAYQRNCHEPAGTVFALFNAAVRKDAKGNGFSLSIYSPNQIMKMGTSLDYGVCKGKRPDGMACTLVINKRQGTYCKYHKSKSSQKYSTGRTELKGGNLRTSFRPRDYLKSEGIYLVDPLADKTNLKKSKPLKLLSVDGLKKALSNAGKVTTTSHSQGIRFLSEVTGKADQKMMKNEPKSQNEQSKYAEKRKSSSVNMGHSSLTRNRQLDVKRIKTEGQGLVDKTTKSTGKMIELDLVSSDEDF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06147 419 MobiDBLite consensus disorder prediction 1 90 - -
Trre6g06147 419 MobiDBLite consensus disorder prediction 345 365 - -
Trre6g06147 419 FunFam DNA replication licensing factor mcm10 82 256 - -
Trre6g06147 419 MobiDBLite consensus disorder prediction 37 57 - -
Trre6g06147 419 MobiDBLite consensus disorder prediction 366 380 - -
Trre6g06147 419 Pfam Primase zinc finger 221 266 IPR015408 GO:0005634|GO:0006260
Trre6g06147 419 PANTHER PROTEIN MCM10 HOMOLOG 28 381 IPR040184 GO:0003690|GO:0003697|GO:0006270
Trre6g06147 419 MobiDBLite consensus disorder prediction 342 390 - -
Trre6g06147 419 Gene3D - 83 255 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06147 Trre-Chr6 61189132 61191646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06147 22 418 Core DNA Replication Machinery Family AT2G20980 54.250 3.40e-132 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06147 K10736 - gmx:100527758 511.916