Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06144 ATGGGAAGGTCCCCTTGCTGCGAGAAAGGTCATACAAACAAAGGAGCATGGAGCAAAGAAGAAGATGAGCGACTCATAGCTTATATTACAGCCCACGGTGAAGGATGTTGGCGATCTCTCCCCAAAGCCGCTGGTCTTCTCCGCTGTGGTAAGAGTTGTCGTCTCCGGTGGATCAACTATCTCCGCCCTGACCTCAAGCGTGGCAATTTCACCCAACAGGAAGATCAACTCATCATCAAAGTCCACACTCTCCTTGGTAACAAGTGGTCTCTAATAGCTGGAAGGTTGCCCGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACGCATTTAAGAAAGAAGCTTTTGAGCAGAGGAATTGATCCTGCAACTCACATGCCTCTCAACCAAACTTCCAAACAAGAGGAACGCTGCCCTGATTTGAATCTTGAGCTAACCATTAGTCCTCCACATGATCAGCTGCAGCAGCCATTCAGTAGTGGCACCAGCAGTACTGCTACAGATTAA 510 0.4765 MGRSPCCEKGHTNKGAWSKEEDERLIAYITAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTQQEDQLIIKVHTLLGNKWSLIAGRLPGRTDNEIKNYWNTHLRKKLLSRGIDPATHMPLNQTSKQEERCPDLNLELTISPPHDQLQQPFSSGTSSTATD 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06144 169 Gene3D - 14 66 - -
Trre6g06144 169 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre6g06144 169 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre6g06144 169 CDD SANT 69 112 IPR001005 -
Trre6g06144 169 CDD SANT 16 61 IPR001005 -
Trre6g06144 169 FunFam Myb transcription factor 68 137 - -
Trre6g06144 169 Gene3D - 69 142 - -
Trre6g06144 169 FunFam MYB-related transcription factor 13 66 - -
Trre6g06144 169 SMART sant 66 114 IPR001005 -
Trre6g06144 169 SMART sant 13 63 IPR001005 -
Trre6g06144 169 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre6g06144 169 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 61 IPR017930 -
Trre6g06144 169 MobiDBLite consensus disorder prediction 145 169 - -
Trre6g06144 169 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 134 - -
Trre6g06144 169 MobiDBLite consensus disorder prediction 149 169 - -
Trre6g06144 169 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Trre6g06144 169 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre6g06144 169 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06144 Trre-Chr6 61172522 61173200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06144 1 160 MYB Transcription Factor Family AT4G38620 69.822 6.38e-89 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g06144 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06144 K09422 - sspl:121764564 293.893