Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06140 ATGGTCATTTTACTCAAATCCCTAGAAGATCATTTGTTCAAAGCATCAATCTCAGAAGACATGCTAGAAATTCTCGAGGTACTAGAAAAACATCTACTCGACGGTTCAAACTCAATCACCACCACCATGAAATCTGCTTATTGCCGCGTTGCGGTGGAGTGTACTTTGAAATACCTTGAAGCAAAAGCATCACACCCTATCTACCTCCAAGCTGTGGATAGGATATGGAGAGGTAGGATTTTAGCCATAGCGAGTCATGGGAGTCATTTGTTCTCTGATGATTTGAAAAACTGGAAAACTGAAATCGAGAATTCCCTTTTGGACATCAACAAGTTTGTTTCCCTCCCAGATACTCGAATGGAAGCACTTCACAAGGTACAAATGTTTTTTGATCAAGCTTGGGATTACTTCTGTGCTTCTTTTCAGATTGTCAATGAGGATATGAATCAGGAGGCACAATCTGAATACCACAATGCAAATGCATATGTAGCCAACTCACAAGATGATTGCCAAAATATTAACAATAACGAGGCTGCTTGTAGTCATGAGGGAGCAACAACAAGCAACACAGTTGGAGTTACTTTGCGTCGTTCTAAGAGGAAGAACTCTTCTCCATTGAAGCACCATGAGCCAACTGAAATTACAAAAAGGAGAAGAAATATCTGGAGTGAATCAGAAGTGGATACTCTAAGGTCCGGAGTATTGAAATTTGGCAGAGAATGGAAAAAAATCCTTAATTTTTATGGATTTGAAAAGAGAACCGCAGTTGATCTGAAGGAGAAGTGGACAAACATACTGAAGTCTGAAGCCAAACAAAACAAAGGCAAACGAAACATTTGCAAATAG 846 0.396 MVILLKSLEDHLFKASISEDMLEILEVLEKHLLDGSNSITTTMKSAYCRVAVECTLKYLEAKASHPIYLQAVDRIWRGRILAIASHGSHLFSDDLKNWKTEIENSLLDINKFVSLPDTRMEALHKVQMFFDQAWDYFCASFQIVNEDMNQEAQSEYHNANAYVANSQDDCQNINNNEAACSHEGATTSNTVGVTLRRSKRKNSSPLKHHEPTEITKRRRNIWSESEVDTLRSGVLKFGREWKKILNFYGFEKRTAVDLKEKWTNILKSEAKQNKGKRNICK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06140 281 SUPERFAMILY Homeodomain-like 217 271 IPR009057 -
Trre6g06140 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 270 IPR017930 -
Trre6g06140 281 Gene3D - 211 269 - -
Trre6g06140 281 PANTHER MYB TRANSCRIPTION FACTOR 3 172 - -
Trre6g06140 281 ProSiteProfiles Myb-like domain profile. 214 266 IPR001005 -
Trre6g06140 281 SMART sant 218 268 IPR001005 -
Trre6g06140 281 CDD SANT_TRF 222 267 - -
Trre6g06140 281 Pfam Myb-like DNA-binding domain 221 266 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06140 Trre-Chr6 61145206 61146491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06140 122 266 Single Myb Histone (SMH) Gene Family AT1G15720 31.081 5.23e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre6g06140 Myb_DNA-binding 2.5e-07 CL0123