Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06124 ATGGACGGCGGCGAGGACAATTCTCACCAGGGAAGTTCGTTAGTCATTCATCAAACAACCGAACAACTCATCGCCAGGTGCATAGCTCCCGTCAAAAAGGAATTCATTCGTCCACCTCCCGATAGAACAACTTCTTCTCAAAACGACACCGTTTCCATCCCAAACGATAAACCCCCTGTTCTCGCCAAGGAGAAGAAATCTAAACGCCAACTCAAACGCGAACGTCGTCAGGACCAAAAATCAACAAAAAATCTATGTCCAGAAATTTCAAAGTCAGGTGATGTTAATTCGTGTCGTTATCAAGATAAGTGTAGATTCAGCCATGATATAGAAGCTTTTAAGGCGCAGAAACCTGGTGATTTGGAAGGTGAATGTCCTTTCTTGAAATCTGAAGGTTCTTGCCCTTATGGTTTATCGTGTAGATTTTTAAGTACTCATGAAGAGGGTAAGCCATTATCTTCTAATGGATTGGAGAAAAGGTCTGAAGTTAATGGTTTTAGCAAAGATGTTCAAAAGCTTTTATGGAAAAATAAGATGACCTACCCCAAAGCTGATGCTAAACTCAAAGCTCTTGGCCTCTTTAGTAAGCCAAAAGTGAATAACTTGGAAAACAAAGATGGTGGTGGCAAATGTGTTCAGTCTGATGAAAATGGTTCTTGTGCGGTTGCATCTGAATTGGAAAACAATGATGGTGTTGACAAATGCCATCTGTCTGATGATGATGGCTCTTGCGGGGTTGATGCTGACCCAGGTTCTAAGTTAGAATGCTCTGCAGAAGTTAAAAAAGACGATGGCATTACTAGAGAACTTGAATCTGATATAATCTGTCCCCTAAAGAGAAGAAAAACTGAAGAAAATTGTGAAGATGTTGGGACAGAAAATGAAGGTGTGAGTGTTGTTGACCAAAATGTTGATGGAAGCTGCATAAAATCTGAACCAGAGGCAGGAACTGAAGCTATAACCCCAGAAACTGATCCAAGCTTGAAGTTGCACTCACGTGAAAAGAAGCTTATTGATTTCAGGGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTACAGGGTCAAGCTTCTGAATGGGCATTGCTGAGACGCCATTCATCTGAAGAGTTATTTGGTGTACAAATCTGTGGTGCATATCCAGATACTGTGGCACGAACAGTTGAACTAATAGAAAAGGAATGTACAGTAGATTTCATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGCATGAAAAGTGTTGTAGAAGTAGCTTCAGGCACAGTCGATATACCAATAACTATCAAGGTACGGACAGCTTATTTTGAAGGGAAGAATCGTATCGACTCTCTGATAGCAGACTTTAGCTCTTGGGGAGCTAGTGCAGTGGCAATACACGGCAGGTCACGGCAACAACGCTACAGCAAGCTTGCTGATTGGGATTATGTATATCAGTGTACCAAGAAAGCCCCTAATAATTTGCAAGTAGTGGGGAATGGAGATGTTTTTTCATTCGTAGACTGGAACAGCCACAAAACTGAATGTCCTGAACTTGCTACGTGCATGATTGCCCGTGGTGCACTTATTAAACCTTGGTTATTTACGGAGATAAAGGAACAAAGACATTGGGATATCAGTTCTGGTGAGCGGCTAAATATTTTCAAAGATTTTGTGAATTTTGGTCTTCAACATTGGGGTTCAGATACAAAAGGGGTGGAGACAACTAGGCGATTCTTGTTGGAATGGCTTAGCTATACTTGTAGGTACATACCTGTTGGCCTTTTGGAAGTGGTTCCACAACGAATAAATTGGCGCCCACCATCTTACTATGGGCGTGATGACCTTGAGACACTGATGGCCTCAGACTCTGCAGCCGACTGGGTACGTTTATCAGAGATGTTACTTGGCAAAGTTCCAGAAGGCTTTACTTTTGCACCAAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTAA 2088 0.4171 MDGGEDNSHQGSSLVIHQTTEQLIARCIAPVKKEFIRPPPDRTTSSQNDTVSIPNDKPPVLAKEKKSKRQLKRERRQDQKSTKNLCPEISKSGDVNSCRYQDKCRFSHDIEAFKAQKPGDLEGECPFLKSEGSCPYGLSCRFLSTHEEGKPLSSNGLEKRSEVNGFSKDVQKLLWKNKMTYPKADAKLKALGLFSKPKVNNLENKDGGGKCVQSDENGSCAVASELENNDGVDKCHLSDDDGSCGVDADPGSKLECSAEVKKDDGITRELESDIICPLKRRKTEENCEDVGTENEGVSVVDQNVDGSCIKSEPEAGTEAITPETDPSLKLHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEELFGVQICGAYPDTVARTVELIEKECTVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSVVEVASGTVDIPITIKVRTAYFEGKNRIDSLIADFSSWGASAVAIHGRSRQQRYSKLADWDYVYQCTKKAPNNLQVVGNGDVFSFVDWNSHKTECPELATCMIARGALIKPWLFTEIKEQRHWDISSGERLNIFKDFVNFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLEVVPQRINWRPPSYYGRDDLETLMASDSAADWVRLSEMLLGKVPEGFTFAPKHKSNAYDRAENG 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06124 695 MobiDBLite consensus disorder prediction 34 88 - -
Trre6g06124 695 ProSitePatterns Uncharacterized protein family UPF0034 signature. 427 445 IPR018517 GO:0008033|GO:0017150|GO:0050660
Trre6g06124 695 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 339 581 - -
Trre6g06124 695 Coils Coil 61 81 - -
Trre6g06124 695 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 19 689 - -
Trre6g06124 695 SUPERFAMILY FMN-linked oxidoreductases 343 656 - -
Trre6g06124 695 ProSiteProfiles Zinc finger C3H1-type profile. 80 111 IPR000571 GO:0046872
Trre6g06124 695 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 76 155 - -
Trre6g06124 695 Gene3D Aldolase class I 338 581 IPR013785 -
Trre6g06124 695 Pfam Dihydrouridine synthase (Dus) 346 580 IPR035587 -
Trre6g06124 695 Pfam CCCH-type zinc finger 85 109 IPR041367 -
Trre6g06124 695 SMART c3hfinal6 121 148 IPR000571 GO:0046872
Trre6g06124 695 SMART c3hfinal6 81 110 IPR000571 GO:0046872
Trre6g06124 695 Gene3D - 75 155 - -
Trre6g06124 695 ProSiteProfiles Zinc finger C3H1-type profile. 124 149 IPR000571 GO:0046872
Trre6g06124 695 MobiDBLite consensus disorder prediction 40 54 - -
Trre6g06124 695 CDD DUS_like_FMN 343 578 IPR035587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06124 Trre-Chr6 61012573 61017446 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g06124 Dus 5.9e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06124 K05544 - gmx:100783494 1083.55