Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06119 ATGGCTGCCGAAGAAGACGAAGCTTCACGTAACCAATTTCCACCTCCTCTCCAACAACCCTCCGTTTCTCCGCCGCCTGACCTCCCTATCAATGCTGACATCCACACCGCCGGAGAGCTTGAGGAGGCTGTGATTACAGGTGAGACGAGTGATGCTGCCGTAAACACGCAGGTTGCTGTTGATGACGTGGCTTCTGTGGAGGGTGGTGAAATGCATGTGATGGATGGTATTGAAGATGAAATTGCTGTGGAGGAGGACAAGGGGGATGAAGGAACTGAAGTTGATTTGGAACCCGAGAATGTGGAAGAGGCCGAAGCCAATTTGATAATCGAAGAGGAGGAGGTTCAAATTAGGAATGATGAAAACACAGATGAAGCTCCTCTGGTGGGAGATGAAGAAGAAGGAGACAACGATGAAAAGGAAGAAGGAGAAGAAAACGAAGAAGACGAGAAGGAAGAAGAAGGAGATGAAATAGAAGAAGACGAGAAGGTAGAAGAAATAGAAGAAGAAGGAGAACAAGAGCAAGAGCAGGAAGAAGAAGAAGAAGAGGAAGAAGAAGCTGAAGTTGATGGTGATGGTGGCTTGACAGAAGATAAAGAGGCTGCTGAGGAGATGGAGGTGGCAGAGGAGGAGGAGCAGAGTGTGAGTGGTGGGAAAAGGAAGCGTGGGAATGGGAAGAATTCAAAGTCGACCGGGAAAGTTCCTTCAAAGAAAAAGATGGAAGAGGACGTTTGTTTCATTTGCTTTGATGGCGGTGACCTCGTGCTCTGTGACCGCAGGGGTTGCCCCAAGGCTTACCACCCTTCCTGCATTAATCGTGACGAGGCCTTCTTTCAATCCAAAGGAAAGTGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCATACTACTTGTGCTATACATGTACATTCTCTTTGTGCAAGGGTTGTATCAAAGATGCCGTTATGCTATGTGTAAGGGGAAACAAAGGCTTTTGCGAGACATGCATGAGAACTGTAACGTTGATTGAACAGAATGAGGAGGGAAACAACATGGCACAAGTTGATTTTGATGACAAAAACAGCTGGGAATATCTCTTCAAGGATTACTATGTAGATCTAAAAGGAAAGCTATCTCTAACATCTGATGAACTCGCTCAAGCTAAAAACCCTTGGAAAGGATCTGGTAAGCTTCCTTCTAAAGAGGAATTGCCGGATGAACTTTTTGATGCCACAAATGATAGAGGATCAGATTCAGATAGCTCTTATGAGAAAGCAGATTTGAGTCGATCTAAAAAAAGAAAGTCCAAGAAACGGGCAATGACTCGTTCCAAAGAAAAGAATTCACATAGTGCAGTGACAGCGCATGGTGCTGACGGGCGATCTACGGATGAAAGCTCTGAGTGGGCTTCAAATGAGCTTTTGGAGTTTGTTATGCATATGAGAAATGGAGATAAATCTTTGTTGTCACAGTTTGATGTGCATGCTCTTTTGCTAGAATATATTAAAATAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAAATTGTTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAGCCAAGAGTTGGACATTTCGAAATGTTAAAACTTCTTGAATCCCATTTCCTTCTAAAAGAGGATTCGCAGGCTGAAGATCTCCAGGGGAGTGTTGTTGATACTGATGTTAGTCATTTGGAGGGTGATGGCAATGATGATACATATATTAAAGCTGGAAAAGATAAGAAACGTAAAGGTCGTAAAAAGGGTGATGATAGAGGACTTCAATCTAATGTTGATGATTATGCAGCCATTGATAATCATAATATTAATTTAATTTATCTAAGACGCAATTTAGTGGAAGAACTACTTGAAGATACAGATAAGTTTAATGATAACGCTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAACAGCAGAGCCATATAAAGTTGGTAAAAAGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATGGATATCATCTCAAATCAGGAGTTCACAGAGGATGAGTGCAAGCGCCTTCGCCAAAGCATAAAATGCGGCCTCATTAATCGAATGACTGTGGGTGACATTCAGGACAAAGCATTGACACTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAGCAGAGATAGTGCGGCTAAGTCACCTTCGTGATAGAGCCAGTGAGAATGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACCCCTGAAGAACGGCAACGTAGATTGGAGGAAATTCCAGAAATACACGTGGATCCAAAGATGGATCCAAGTTATGAGTCTGACGAAGGAGATGAAATGGAGGATAAAAGACAAGAAAACTTCATGAGACCTAGAGGGTCAACTGCGTTTGGAAGGAAGGGTAGAGAAATTGCTTCGCCGAGAAGTGGTTCCATTTCAAGCGATTCTTGGAGTGGAACAAGGAATTATTCTCATGGGAATCAGGAACTCAGCAGAAATTTATCTAATAAGGGATTTTCAGTCAAAGGTGATGGTGTTTCTAATGCTAGCGAGGTTTTTAATGATGCTAAATTGCACCAGGGAAGAGATAGGGAATCACAACTATCTAATAGTTGGGAGAGGCAAAAGCTACTGTCTTCAAGCTTGGACGGTGGTGTTAAAAATGTCAAGCCATTGGTAACATCCGAGCCTTTTTCTACTACTGTGTCAGAAGCTGCCACAGCACCATCTTCTGCCGGAATAGCTGCCCCAGCTGTGAAAATTAATGAATCTGAAAAGATGTGGCATTATCAGGATCCATCTGGAAAAGTTCAAGGACCATTTTCCATAACGCAACTTCGCAAATGGAATAATACCGGATACTTCCCTTCTGATTTGAAGATTTGGAAAACCACCGACAAACAAGATGAATCTATACTCTTAACAGATGTCTTAGCAGGGAAGTTTTCAAAGGAACCATCCATGGTAGATAAAACTCCTCCTAAGACTCAAAATCATTCATCCTCATTCTCTAGGATGTCTCCTTTGGCCGCTCAAGGTTCAGCAAGTAAAACATCTCCATTGGCAGTTGAGGTCCCTAAGAATCCTGGAAATGGCTGGGGTTCTGATGTTGGTGTCAGAAATGAATCGACAAATCTTCCTTCGCCTACTCCCCAAACTTCTTCAGGTGGGCCTAAGGTTCATGATTTTGAAAATTGGTCACCAACACCTGTCCAAATGGCTGGGTCTGTCTTGGGAAATTCATTCACAAATGGCCTTGGAGGTTTGCAGACCTCCGTAGCAGTAAACTCACAACCTGGTATGACTACAAATACCACTCAAGTACATCTTCATGCAACAGAAATGGCACAGGCTCTGGCTGCAGGTGTTGACATTAAAACAACACCTGCAACTATGCAAAACCAGGCTGGGAGTAGCCATAATTCTCATGCTGAAATACAAGGGTGGGGGCAGTCTGTGGCTCCAAAGCCAGAATCACAGGCCTGGGGAGGTACTCCATCTCAAAGGGTAGAACCAACTAATTCTGCTACCATACCTGCCCAGCAAGCTTCCCATGGTCTATGGGGTGAGGCTTCATCTGTTCAGAACTCTGCCTCATTTAGCAATGGAAATCCAACTGGGAGTTTACCCACACACGGTTTTCCAGGCATGACTGCACCTGAGCCTTGGAGACCACAAGTTTCAGGTAATCAAGCAAACGCCATGGCCCTGCCACCGCCCAACATACCCTGGGGCGTAAACATGCCAGGAAATCAGAATATTAGCTGGAGTGGGGCAATACCTGGCAATATGAATGTCAATTGGATGCCTGCACAAGTGCCAGCACCGGGAAATGCAACTCCAGGATGGGCAGCTCCTACCCAGGGGCTACCTCAAGTAAATGCAAATGCAGGTAGCTGGGGATCACCTGGTCAAGGTCATCAGCAGGTAAATGCAAATGCAGGTTGGGGTGTGCCTGGTCAAGGGCCAGCACCTGGAAGTGCCAATCCTGCTTGGGCTGCATCTGCTGGGAACCCAGGCATGTGGAGAAACGAGCAAAGTCATAATGGAGACAGGTTTTCCAACCAAGGGGAACGTGGTACGCGCAGTGGAGATTCTGGTCGTGGAGGTAAATCTTGGAACAGGCAGTCATCATTTAGAAGCGGGGGCAGAGGGGGTTCTTCTAGGCCTCCCGGTGGGGGACAAAGAGGAATCTGCCGGTATCATGAGAGTGGAAATTGCAGGAAGGGAGCTTCATGTGATTATCAACACAATTAA 4332 0.4448 MAAEEDEASRNQFPPPLQQPSVSPPPDLPINADIHTAGELEEAVITGETSDAAVNTQVAVDDVASVEGGEMHVMDGIEDEIAVEEDKGDEGTEVDLEPENVEEAEANLIIEEEEVQIRNDENTDEAPLVGDEEEGDNDEKEEGEENEEDEKEEEGDEIEEDEKVEEIEEEGEQEQEQEEEEEEEEEAEVDGDGGLTEDKEAAEEMEVAEEEEQSVSGGKRKRGNGKNSKSTGKVPSKKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCINRDEAFFQSKGKWNCGWHLCSNCEKNAYYLCYTCTFSLCKGCIKDAVMLCVRGNKGFCETCMRTVTLIEQNEEGNNMAQVDFDDKNSWEYLFKDYYVDLKGKLSLTSDELAQAKNPWKGSGKLPSKEELPDELFDATNDRGSDSDSSYEKADLSRSKKRKSKKRAMTRSKEKNSHSAVTAHGADGRSTDESSEWASNELLEFVMHMRNGDKSLLSQFDVHALLLEYIKINKLRDPRRKSQIVCDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTDVSHLEGDGNDDTYIKAGKDKKRKGRKKGDDRGLQSNVDDYAAIDNHNINLIYLRRNLVEELLEDTDKFNDNAVGSFVRIRISGSGQKQDLYRLVQVVGTCKTAEPYKVGKKMTDILLEILNLNKTEIVSMDIISNQEFTEDECKRLRQSIKCGLINRMTVGDIQDKALTLQAVRVKDWLEAEIVRLSHLRDRASENGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPKMDPSYESDEGDEMEDKRQENFMRPRGSTAFGRKGREIASPRSGSISSDSWSGTRNYSHGNQELSRNLSNKGFSVKGDGVSNASEVFNDAKLHQGRDRESQLSNSWERQKLLSSSLDGGVKNVKPLVTSEPFSTTVSEAATAPSSAGIAAPAVKINESEKMWHYQDPSGKVQGPFSITQLRKWNNTGYFPSDLKIWKTTDKQDESILLTDVLAGKFSKEPSMVDKTPPKTQNHSSSFSRMSPLAAQGSASKTSPLAVEVPKNPGNGWGSDVGVRNESTNLPSPTPQTSSGGPKVHDFENWSPTPVQMAGSVLGNSFTNGLGGLQTSVAVNSQPGMTTNTTQVHLHATEMAQALAAGVDIKTTPATMQNQAGSSHNSHAEIQGWGQSVAPKPESQAWGGTPSQRVEPTNSATIPAQQASHGLWGEASSVQNSASFSNGNPTGSLPTHGFPGMTAPEPWRPQVSGNQANAMALPPPNIPWGVNMPGNQNISWSGAIPGNMNVNWMPAQVPAPGNATPGWAAPTQGLPQVNANAGSWGSPGQGHQQVNANAGWGVPGQGPAPGSANPAWAASAGNPGMWRNEQSHNGDRFSNQGERGTRSGDSGRGGKSWNRQSSFRSGGRGGSSRPPGGGQRGICRYHESGNCRKGASCDYQHN 1443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06119 1443 MobiDBLite consensus disorder prediction 1177 1246 - -
Trre6g06119 1443 Coils Coil 101 121 - -
Trre6g06119 1443 Pfam GYF domain 953 995 IPR003169 GO:0005515
Trre6g06119 1443 MobiDBLite consensus disorder prediction 776 814 - -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 404 426 - -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 1310 1340 - -
Trre6g06119 1443 Pfam SWIB/MDM2 domain 467 540 IPR003121 -
Trre6g06119 1443 CDD GYF 950 1005 IPR003169 GO:0005515
Trre6g06119 1443 FunFam Zinc finger CCCH domain-containing protein 19 602 731 - -
Trre6g06119 1443 SUPERFAMILY Plus3-like 602 730 IPR036128 GO:0003677
Trre6g06119 1443 MobiDBLite consensus disorder prediction 1062 1084 - -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 126 193 - -
Trre6g06119 1443 ProSiteProfiles SWIB/MDM2 domain profile. 459 542 IPR003121 -
Trre6g06119 1443 SMART swib_2 474 545 IPR019835 -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 1 33 - -
Trre6g06119 1443 ProSiteProfiles Zinc finger C3H1-type profile. 1418 1443 IPR000571 GO:0046872
Trre6g06119 1443 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 149 1443 - -
Trre6g06119 1443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 336 IPR013083 -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 776 861 - -
Trre6g06119 1443 FunFam Zinc finger CCCH domain-containing protein 19 452 547 - -
Trre6g06119 1443 SUPERFAMILY GYF domain 942 1003 IPR035445 -
Trre6g06119 1443 CDD PHD5_NSD 244 289 - -
Trre6g06119 1443 ProSiteProfiles Zinc finger PHD-type profile. 242 308 IPR019787 -
Trre6g06119 1443 SMART gyf_5 951 1006 IPR003169 GO:0005515
Trre6g06119 1443 MobiDBLite consensus disorder prediction 1186 1236 - -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 1365 1409 - -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 567 590 - -
Trre6g06119 1443 SUPERFAMILY SWIB/MDM2 domain 464 541 IPR036885 -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 404 462 - -
Trre6g06119 1443 SUPERFAMILY FYVE/PHD zinc finger 241 295 IPR011011 -
Trre6g06119 1443 Gene3D SWIB/MDM2 domain 454 550 IPR036885 -
Trre6g06119 1443 Coils Coil 137 190 - -
Trre6g06119 1443 CDD SWIB-MDM2_like 465 540 - -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 832 861 - -
Trre6g06119 1443 ProSitePatterns Zinc finger PHD-type signature. 245 305 IPR019786 -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 1010 1084 - -
Trre6g06119 1443 SMART PHD_3 244 290 IPR001965 -
Trre6g06119 1443 ProSiteProfiles GYF domain profile. 950 1004 IPR003169 GO:0005515
Trre6g06119 1443 MobiDBLite consensus disorder prediction 1309 1443 - -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 111 125 - -
Trre6g06119 1443 Pfam Plus-3 domain 606 709 IPR004343 GO:0003677
Trre6g06119 1443 Gene3D - 951 1010 IPR035445 -
Trre6g06119 1443 SMART rtf1 601 711 IPR004343 GO:0003677
Trre6g06119 1443 MobiDBLite consensus disorder prediction 1015 1046 - -
Trre6g06119 1443 MobiDBLite consensus disorder prediction 108 235 - -
Trre6g06119 1443 FunFam Zinc finger CCCH domain-containing protein 19 234 334 - -
Trre6g06119 1443 ProSiteProfiles Plus3 domain profile. 601 734 IPR004343 GO:0003677
Trre6g06119 1443 Gene3D - 603 731 IPR036128 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06119 Trre-Chr6 60973193 60985672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06119 242 329 PHD Transcription Factor Family AT5G36670 36.000 4.60e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Trre6g06119 Plus-3 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06119 - - aprc:113865790 1931.38