Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06106 ATGGAGTTTGCCGTTGCAAAAGCTTTGAAACCGAGTTTAAGGAGGGAGTTTGTTTTTCAACAAACTCTCGGCGAGGAACTTTTCAGTTTCAACGCTAACACGGTGGTTGCCGGTGAAGATTTCTCCGTTGACGACCTTCTTGACTTTTCAAACGGCGACGTTATTCACCATGAAAACGACGACGAAGAAGAAGAGGAGGAGAAAGATAACTCATCTCTTTCCTCTCACTCTCTCTCAGAAGATAACAATTCCTCCAATTCCACCGACGCTTCCTATGATTCCATTTTCTCCACTGAATTACTTGTTCCGGATGATGACGTGGCAGGCTTGGAATGGGTTTCTCACTTCGTAGATGATTCTCTACCGGAGCTATCTCTTCTCTACCCGGTTCAAATTCAAACAAACACGTGTCCTCAAAATCAAACCAACCATGGAAAAACTCTTCGTTTTTCGTCTGAGAAAATCAAAATCACCAAAAAGACCAGAACCATGAAGAACAGAAAACCAAACCCTCGCGCTTGGGCTCTTAGCCCTTTGCTTTTGCGTCCGTTTTTCCCGTCACCGCCGCCTTTGGTTTCCGGTGAGCCGCCAGCGAAGAAACAGAAGAAAAAGGCCGAGGCCCAAGTTACTGGTGCTGAGGCCCAAGATGAGGCCCATTTACAGCGACGGTGTAGTCATTGCCAGGTTCAAAAGACGCCGCAGTGGAGAACCGGTCCTTTAGGAGCTAAAACCCTATGTAACGCGTGTGGGGTTCGGTATAAGTCCGGTCGGCTTTTTTCGGAGTATAGACCGGCTTGTAGCCCAACCTTCAGCAGTGAAATTCATTCCAATAGTCACCGGAAAGTGTTGGAGATGAGGAAAAGGAAAGGGATGGTTGGACCGGAACCCGGTTTACCGGCTCAGACCCAAATGGTTACGACTTGTTGA 927 0.4757 MEFAVAKALKPSLRREFVFQQTLGEELFSFNANTVVAGEDFSVDDLLDFSNGDVIHHENDDEEEEEEKDNSSLSSHSLSEDNNSSNSTDASYDSIFSTELLVPDDDVAGLEWVSHFVDDSLPELSLLYPVQIQTNTCPQNQTNHGKTLRFSSEKIKITKKTRTMKNRKPNPRAWALSPLLLRPFFPSPPPLVSGEPPAKKQKKKAEAQVTGAEAQDEAHLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGPEPGLPAQTQMVTTC 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06106 308 MobiDBLite consensus disorder prediction 75 90 - -
Trre6g06106 308 PANTHER GATA TRANSCRIPTION FACTOR 33 293 - -
Trre6g06106 308 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
Trre6g06106 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 280 - -
Trre6g06106 308 SMART GATA_3 218 272 IPR000679 GO:0006355|GO:0043565
Trre6g06106 308 PIRSF Txn_fac_GATA_plant 20 306 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trre6g06106 308 Gene3D - 214 290 IPR013088 GO:0006355|GO:0008270
Trre6g06106 308 MobiDBLite consensus disorder prediction 57 90 - -
Trre6g06106 308 MobiDBLite consensus disorder prediction 197 217 - -
Trre6g06106 308 ProSiteProfiles GATA-type zinc finger domain profile. 218 254 IPR000679 GO:0006355|GO:0043565
Trre6g06106 308 FunFam GATA transcription factor 214 297 - -
Trre6g06106 308 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Trre6g06106 308 MobiDBLite consensus disorder prediction 188 217 - -
Trre6g06106 308 CDD ZnF_GATA 223 280 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06106 Trre-Chr6 60912615 60913631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06106 40 289 C2C2-Gata Transcription Factor Family AT4G36240 41.107 6.76e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre6g06106 GATA 9.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06106 - - gmx:100780311 323.553