Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06102 ATGAAGATCCAATGTGATGTTTGTGAGAAAGCTGAGGCTTCCATGTTCTGTCCTTCAGATGAAGCTGCTCTTTGTAATGGATGTGATCATACTATTCACCATGCCAATAAGCTTGCAACCAAACATGCTCGTTTCTCTCTTGTCCACCTCAACTCCAAAGACTACCGTCTTTGTGATATCTGCCAAGAGAGGCGTGGATATCTATTTTGCCAAGAAGACAGAGCGATTTTATGCCGAGAATGTGACATTCCAATCCATAAAGCAAATGAACATACACAGAAACATAACAGGTTTCTTCTATCTGGTGTGAAGCTTTCAAACAATTCTTTGGACACAGATTCATCATCTACCAGTATTGGCTCTGAAACAAGAAACTACTCTAGTAGATCAAAAGCAAACATAATACCAAGATCAGTTTCCAATGAAAATGTCAGTTCTTCTTGCAAGATTGAAGATAATATGGCTAGTGATACTGGTTCTGCTTCAACAAGCAGCATTTCTGAATACTTGATTGAAACCATACCCGGTTACTGCTTCGAAGATTTTCTTAATGCTTCATTCCCTCCTAATGGTTTCTGTAAGAATAATTATTCGGCATTTCAGTACCAAGATGTTCAAGCTAGCAAGTTTTTGTTTCCTCAACCTCAAGTAACATGTGTACCTCTAGCACAGAAGATTCAATCAGCTCAACTAATTATTCCAACTCCTTCTAACATTGGTTCAGTGGTTGGAGTTAAAGAAATTCCAAAAGTGAACACTTTCAAAGGGAACTCAAAATGGAAGAAAAATTATGGATGTACAGTTCCAGTAAATGGTGCTACATTCATAAAAAAATCTAAATATTCTAGATAA 852 0.3721 MKIQCDVCEKAEASMFCPSDEAALCNGCDHTIHHANKLATKHARFSLVHLNSKDYRLCDICQERRGYLFCQEDRAILCRECDIPIHKANEHTQKHNRFLLSGVKLSNNSLDTDSSSTSIGSETRNYSSRSKANIIPRSVSNENVSSSCKIEDNMASDTGSASTSSISEYLIETIPGYCFEDFLNASFPPNGFCKNNYSAFQYQDVQASKFLFPQPQVTCVPLAQKIQSAQLIIPTPSNIGSVVGVKEIPKVNTFKGNSKWKKNYGCTVPVNGATFIKKSKYSR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06102 283 CDD Bbox1_BBX-like 5 47 - -
Trre6g06102 283 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Trre6g06102 283 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Trre6g06102 283 SMART bboxneu5 53 100 IPR000315 GO:0008270
Trre6g06102 283 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre6g06102 283 CDD Bbox1_BBX-like 57 100 - -
Trre6g06102 283 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre6g06102 283 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 221 - -
Trre6g06102 283 Gene3D Classic Zinc Finger 1 98 - -
Trre6g06102 283 FunFam B-box zinc finger protein 21 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06102 Trre-Chr6 60878087 60879482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06102 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 50.971 4.01e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre6g06102 zf-B_box 1.4e-06 No_clan