Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06088 ATGGCTTCATCAAGTGGTACATCTTCAGGCTATTCAACACTACCAAACTCAGGTTCAGAGGAGGATTTGATCCTTCTAATGGATCAAAGAAAAAGAAAGAGAATGATATCAAACCGCGAATCGGCAAGAAGATCTCGATTAAGGAAACAAAAACACTTAGATGATCTTGCTGTTCAAGTGAGTCAGCTCAGAAATGAGAATCAACAGATTCTAACTTCTGTTAACCTCACAACACAAAGATTCTTGGCTGTTGAATCTGAAAACTCTGTTCTTAGAGCTCAACTGACTGAACTCAACAACAGATTTGAATCATTGAATGAGATCATCAACTTCATGAATGTTACAAATGGTGTTTTTGAACCTGTTGTTGATAACAATAATAACAATTACTTCAACAACCCTTTGAATATGGGTTATTTGAATCAACCAATCATGGCTTCTGCAGACATGAACATGGTGCATTATTGA 468 0.3632 MASSSGTSSGYSTLPNSGSEEDLILLMDQRKRKRMISNRESARRSRLRKQKHLDDLAVQVSQLRNENQQILTSVNLTTQRFLAVESENSVLRAQLTELNNRFESLNEIINFMNVTNGVFEPVVDNNNNNYFNNPLNMGYLNQPIMASADMNMVHY 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06088 155 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Trre6g06088 155 FunFam BZIP transcription factor 28 79 - -
Trre6g06088 155 SUPERFAMILY Leucine zipper domain 30 81 IPR046347 GO:0003700|GO:0006355
Trre6g06088 155 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Trre6g06088 155 Coils Coil 53 73 - -
Trre6g06088 155 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
Trre6g06088 155 Coils Coil 88 108 - -
Trre6g06088 155 PANTHER BZIP TRANSCRIPTION FACTOR 44 4 151 - -
Trre6g06088 155 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
Trre6g06088 155 Gene3D - 28 83 - -
Trre6g06088 155 Pfam bZIP transcription factor 30 72 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06088 Trre-Chr6 60769109 60769576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06088 26 149 bZIP Transcription Factor Family AT4G34590 57.143 1.38e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre6g06088 bZIP_1 3.6e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06088 K25786 - pop:7470005 199.904