Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06076 ATGGAGGGAACTTCATCATCCTCTACAACACATGATTATCATGTTGAAGAAGAAATATTTCCAATATCTGATGATGAGAAATATGCAGAGGAAATACAACTACAACAAGTATTAATTTTCTCTGCTATTTCAAATACTAACAAAGAAATCCAAGTTGTTGATGTTGATGAAATTCATAATGTCAATAACACCCTTTTGAGAAAACTCAAACTAAAAGAGCAAGAGACTTTTGAAGGTGAATCTTCTTCTTCTTCTTCATCTCAATTGAAACAATATTCCTATTGTGGTATCTGCATGGAAACTAAATCTATTGAAGAAATGTTCGAAAACCGAAACTGTTCACACTCATTTTGTGAAGAATGTGTTGGAAAATATCTAGTTGCAAAAATTGAAGAGAATATATCAATGATAAAATGTCCTGATCCAAAATGCAATGCTATGTTAGTGAATGATGAAAAAGAAGTTGTAACTGTTGCAGAATGTCCACATTGTCATAGATTATTCTGTGCAGAATGTAAGGTTTCATGGCATGTAGTTTCTATGTGGAAAAAAGTCAGGGATGTACTCGTATTTCATGCAGATGTGGTAATCAATTTTGCTATGGCTGTGGATCCACATGGAACAATGACTCCCATTATTATTATTCACGTGCAACTAGATAGACTTGTAGTATGA 675 0.3304 MEGTSSSSTTHDYHVEEEIFPISDDEKYAEEIQLQQVLIFSAISNTNKEIQVVDVDEIHNVNNTLLRKLKLKEQETFEGESSSSSSSQLKQYSYCGICMETKSIEEMFENRNCSHSFCEECVGKYLVAKIEENISMIKCPDPKCNAMLVNDEKEVVTVAECPHCHRLFCAECKVSWHVVSMWKKVRDVLVFHADVVINFAMAVDPHGTMTPIIIIHVQLDRLVV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06076 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 160 IPR013083 -
Trre6g06076 224 SUPERFAMILY RING/U-box 90 155 - -
Trre6g06076 224 FunFam RBR-type E3 ubiquitin transferase 90 160 - -
Trre6g06076 224 Pfam IBR domain, a half RING-finger domain 129 177 IPR002867 GO:0008270
Trre6g06076 224 SMART ibrneu5 119 179 IPR002867 GO:0008270
Trre6g06076 224 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 178 IPR031127 GO:0004842|GO:0016567
Trre6g06076 224 ProSitePatterns Zinc finger RING-type signature. 113 122 IPR017907 -
Trre6g06076 224 ProSiteProfiles Zinc finger RING-type profile. 95 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06076 Trre-Chr6 60679597 60680623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06076 95 157 C3H Transcription Factor Family AT2G31770 38.462 9.10e-08 50.1