Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06069 ATGTTGCACTGTTTGAATACTAATTCAGGGAATCTAGCTTCTGAGAGTTGCTCTTCCGACATAACTGTTTTGGAAAGACAAAGAGAAAGAATGAAGTGGCAACAACATGAGCAACAGAATGAACAACGTTACTTCTCTGGAAATGGATTTAACAGTAATACTATGTTCTGTTCTTCTCTGCAACAAGTTGTTCAGAATTCTCAAGATTCTTCTTCACTTCCTCATTTTCTGCCTCTTCAAATCCCAACCGTTGATGTCACTTCTTCTTCATCAATTTCAAGAACTTTCAGCTGTCCACCTCTTCTTCCAGACCCTAAACTCATTGATTCTTCTTCAATTGGAAAACACAATTCTTCTAAAAAGAGAAAATCTGAAAAGCTTAAGGTTGTTGGTGAAATTGAAAACAAAGACAAGAGGATCAAAATTGGTGGTGCTGAGGATGGTGAATCTAAGATCACAGGGAACCACAGTGCCAAAAAGAGCAACAGTAATAATAACAAAGAAAATTGTGGAGCAGAAGATAATACTTCAAACTCAAAGGAAAATTCAAAAGTTTCTGAGGTTCAAAATCAAAAGACTGATTACATTCATGTTCGAGCGCGTCGCGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTGAGAAGGGAAAAGATTAGTGAGAGAATGAAGTATTTACAAGATTTAGTACCAGGATGTAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATAATCAATTATGTTCAGTCTCTTCAAAAACAAGTTGAGTTCTTATCAATGAAATTAGCTACAGTTAATCCAAGTCTTGACTTACATATTGATGATCTATTTGAAAAAGAGGTGTTTCCTACTTGTGGTGCAAATGCAACTTTTCCAGCAATTGGAATATCATCAGAATTGAATAGTAACAATCCTTATCTTCAATTCAATCCACCACAACAATTTGTTCCTTATGGTGGATTAGATACTGGAATGAACCCTACAGATATAGGTCTTAGAAGGAGTATAAGTGCCCCTATATCCATTCCTGAAACTTTTATTGATTCTTCTTGTTTCTCTCAAATTTTACCTTCTACAACATGGGAAGGTGATTTCCAAAATCTTTACAACATGAATTTTGATCAAGCAAGAGCAACATCTTTTCCTTCTCAATCTCAGCTATTTACAGGTCTAGTTGAAGCTGGCAATCTAAAGATCGAGATGTAG 1215 0.3597 MLHCLNTNSGNLASESCSSDITVLERQRERMKWQQHEQQNEQRYFSGNGFNSNTMFCSSLQQVVQNSQDSSSLPHFLPLQIPTVDVTSSSSISRTFSCPPLLPDPKLIDSSSIGKHNSSKKRKSEKLKVVGEIENKDKRIKIGGAEDGESKITGNHSAKKSNSNNNKENCGAEDNTSNSKENSKVSEVQNQKTDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQVEFLSMKLATVNPSLDLHIDDLFEKEVFPTCGANATFPAIGISSELNSNNPYLQFNPPQQFVPYGGLDTGMNPTDIGLRRSISAPISIPETFIDSSCFSQILPSTTWEGDFQNLYNMNFDQARATSFPSQSQLFTGLVEAGNLKIEM 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06069 404 MobiDBLite consensus disorder prediction 155 193 - -
Trre6g06069 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 254 IPR011598 GO:0046983
Trre6g06069 404 CDD bHLH_AtBPE_like 194 279 - -
Trre6g06069 404 Coils Coil 21 41 - -
Trre6g06069 404 SMART finulus 210 260 IPR011598 GO:0046983
Trre6g06069 404 MobiDBLite consensus disorder prediction 124 146 - -
Trre6g06069 404 Gene3D - 201 274 IPR036638 GO:0046983
Trre6g06069 404 MobiDBLite consensus disorder prediction 104 194 - -
Trre6g06069 404 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 72 302 IPR024097 GO:0006355
Trre6g06069 404 FunFam Basic helix-loop-helix transcription factor 201 273 - -
Trre6g06069 404 Pfam Helix-loop-helix DNA-binding domain 208 255 IPR011598 GO:0046983
Trre6g06069 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 271 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06069 Trre-Chr6 60656235 60659036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06069 135 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 48.207 4.33e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g06069 HLH 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06069 - - tpra:123899220 672.544