Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06066 ATGGCCTCAACTTCACTTAGCAAACACAAGCCTTGTGATTCAATTTGGACACCAAAACAGAACAAGTTGTTTGAAAAAGCACTTGCAAAATATGACAAAGATACCCCTGACCGTTGGCAAAATGTAGCAAAAGCAGTTGGTGGTAAATCAGTTGAGGAAGTTAAGAGACACTATGAGTTACTTTTGGAGGATCTCAAACACATTGAATCTGGTCATGTTCCAATTCCAAACTACGAAGTGTAG 243 0.3909 MASTSLSKHKPCDSIWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSVEEVKRHYELLLEDLKHIESGHVPIPNYEV 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06066 80 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Trre6g06066 80 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Trre6g06066 80 Pfam Myb-like DNA-binding domain 16 59 IPR001005 -
Trre6g06066 80 CDD SANT 16 62 IPR001005 -
Trre6g06066 80 Gene3D - 12 75 - -
Trre6g06066 80 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Trre6g06066 80 SMART sant 12 64 IPR001005 -
Trre6g06066 80 FunFam Transcription factor SRM1 8 75 - -
Trre6g06066 80 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 79 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06066 Trre-Chr6 60622786 60623028 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre6g06066 Myb_DNA-binding 4.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06066 - - aprc:113865826 145.591