Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06065 ATGGCAGAAGCTGAATACCGATGCTTTGTTGGTGGACTTGCCTGGGCCACCGACAGCGAGGCTCTTGAGAAAGCCTTTTCACACTTTGGCGAAATCGTCGAATCGAAGGTTATCACCGATCGTGATACTGGAAGATCGAGAGGATTTGGATTTGTCACGTTCTCCTCCGAGCAATCCTTGAAAGACGCGATCGAAGGGATGAACGGCCAGGATCTTGATGGACGCAACATCACTGTGAACGAGGCTCAAAGCCGCGGCAGTGGAGGCGGCGGTGGAGGAGGTGGATTCCGTAGTGGAGGTGGTGGTGGAGGATATAATAGTGGTGGTGGAGGTTATAGCCGCGGTGGAGGAGGAGGAGGTTATGGAGGTGGTGGCCGTCGTGATGGTGGCGGAGGTGGATATGGTGGAGGTGGGGGAGGTTATGGTGGAGGCCGTCGTGAGGGAGGAGGTGGTGGATATGGTGGTGGAGGCGGTAGTTACGGAGGTGGAGGTGGTGGTAACCGATACTCAAGGGGAGGTGGTGATGCTGAAGGAAACTGGAGGAATTAG 549 0.5574 MAEAEYRCFVGGLAWATDSEALEKAFSHFGEIVESKVITDRDTGRSRGFGFVTFSSEQSLKDAIEGMNGQDLDGRNITVNEAQSRGSGGGGGGGGFRSGGGGGGYNSGGGGYSRGGGGGGYGGGGRRDGGGGGYGGGGGGYGGGRREGGGGGYGGGGGSYGGGGGGNRYSRGGGDAEGNWRN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06065 182 SUPERFAMILY RNA-binding domain, RBD 6 116 IPR035979 GO:0003676
Trre6g06065 182 SMART rrm1_1 7 80 IPR000504 GO:0003723
Trre6g06065 182 CDD RRM2_NsCP33_like 7 82 - -
Trre6g06065 182 MobiDBLite consensus disorder prediction 132 182 - -
Trre6g06065 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
Trre6g06065 182 Gene3D - 1 115 IPR012677 -
Trre6g06065 182 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 7 173 - -
Trre6g06065 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06065 Trre-Chr6 60619365 60620206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06065 8 86 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 1.21e-06 45.8