Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06057 ATGTCTGATAACTCAGATGCCAATTCTCCAACACAATCTCCACCCGATTCATCAGCGCCGCCGCCACCAGAGGCTGATAATTCGTCTCCACCACCACCACCACCAGAAGCTGATAATCCATCCCCGCCACCTCCGTTGTCTCCACCTCCTCCGTCATCTCCGCCCCCTTCTGACTCGTCCCAATCTCCACCACCACCACCGTCACAGTCACAGTCACCGCCCGGCAGCACACCATCTCCTCCACACCAGGAAGTGTTTTCTCCTCCACCACCACAGCGTTACCGCTTGTCCCCGCCAAAATCGTCATCAAACTCGAATAAGAACGATAATACATATGAAGAAAGTGGGAATGATTTGAGTGTGGGAACTATAATAGGAGTTGCTGGTGGAGCTGGTTTATTGCTTCTTGTCATTGTCATACTCTTTATTGTATGTTCAAAAAGGAAGAGGAGACCACAACCTCACATTCATTACTACACCAATCAACCACGAGGTCCAAATCAGTATGCATACAATAAAGGTGATGTATACAATAAAGGTGACCACGTACTTAATATTCCCCCACCATCTCAAGGTGGAGGTTGGGGTCCACCACCAACAACCGGTCAACCACCACAACTTATTAGCACTGCTACTAATGGATTTGCGCAACGAAACTTGTTAGGTCAAGGTGGGTTTGGATATGTACATAAAGGTGTTCTTCCTAATGGTAAGGAAATAGCAGTGAAGAGCCTTAAATCAACCGGTGGACAAGGTGACAGAGAGTTTCAAGCTGAGGTTGACACTATCAGTCGTGTTCATCATCGCTATCTTGTTTCGCTTGTTGGATATTGTATTACTGATTCTAAGAAGCTTCTCGTTTATGAATTTGTTCCTAACAAGACCCTTGATTACCACCTTCATGGAAAGGGTCGACCTGTGATGGATTGGGGCACAAGGCTTAAAATTGCGATTGGATCGGCCAAAGGGCTTGCTTATTTACATGAGGATTGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCAAACATTTTACTTGAAAACAACTTTGAAGCAAAAGTGTCTGATTTTGGATTGGCAAAGTTTACTCAAGACGCTAACACTCATGTTTCTACTCGTGTCATGGGAACATTCGGGTATATGGCTCCTGAGTATGCATCAAGTGGTAAGCTAACTGATAAATCTGATGTCTTCTCCTATGGAATTATGCTTTTGGAGCTCATAACTGGGCGACGACCAGTCGGTAACACCGGTGATTATGAAGAAGACAGTTTGGTTGATTGGGCTAGACCACTTTGTGCAAAAGCATTGGAGAATGGAATATTAGTTGGATTGGTGGATATACGTTTAGAAGAAAATTATGATAAACATGAGATGCACGTTTAG 1389 0.4464 MSDNSDANSPTQSPPDSSAPPPPEADNSSPPPPPPEADNPSPPPPLSPPPPSSPPPSDSSQSPPPPPSQSQSPPGSTPSPPHQEVFSPPPPQRYRLSPPKSSSNSNKNDNTYEESGNDLSVGTIIGVAGGAGLLLLVIVILFIVCSKRKRRPQPHIHYYTNQPRGPNQYAYNKGDVYNKGDHVLNIPPPSQGGGWGPPPTTGQPPQLISTATNGFAQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDREFQAEVDTISRVHHRYLVSLVGYCITDSKKLLVYEFVPNKTLDYHLHGKGRPVMDWGTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVSDFGLAKFTQDANTHVSTRVMGTFGYMAPEYASSGKLTDKSDVFSYGIMLLELITGRRPVGNTGDYEEDSLVDWARPLCAKALENGILVGLVDIRLEENYDKHEMHV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06057 462 ProSitePatterns Protein kinases ATP-binding region signature. 221 243 IPR017441 GO:0005524
Trre6g06057 462 MobiDBLite consensus disorder prediction 14 96 - -
Trre6g06057 462 FunFam proline-rich receptor-like protein kinase PERK8 291 462 - -
Trre6g06057 462 ProSiteProfiles Protein kinase domain profile. 215 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g06057 462 Gene3D Transferase(Phosphotransferase) domain 1 291 462 - -
Trre6g06057 462 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 204 290 - -
Trre6g06057 462 SMART serkin_6 215 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g06057 462 SUPERFAMILY Protein kinase-like (PK-like) 199 429 IPR011009 -
Trre6g06057 462 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 130 461 IPR047117 -
Trre6g06057 462 MobiDBLite consensus disorder prediction 97 115 - -
Trre6g06057 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Trre6g06057 462 Gene3D Phosphorylase Kinase; domain 1 201 290 - -
Trre6g06057 462 Pfam Protein tyrosine and serine/threonine kinase 218 418 IPR001245 GO:0004672|GO:0006468
Trre6g06057 462 MobiDBLite consensus disorder prediction 1 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06057 Trre-Chr6 60553962 60556678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06057 115 460 Trihelix Transcription Factor Family AT1G70460 51.733 4.94e-123 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre6g06057 PK_Tyr_Ser-Thr 2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06057 - - gmx:100806299 507.679