Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06036 ATGGAGGGTGGTGAGAGAATCAGTGATGAAATGGATCTCGTTCATTCAGAAAATCGTAATAAGGATCAAAATGCTGCTGTTAATTCCGTTCATTTCGATCAAGAAATGCTTGATCAAGGTGATGCTGATACAACAAATGTCAATTCTACCCCTACTCATCAACTTGAACAACTCATTACCCCAAAACCTAAAGTTAAGAATGTTACAGAAGTCAATAATAATGTACTAAACAGTGCTAACGAGATGACTGCTTATGATGAGTCGGGTACGGCTATGGAGCGAGAAGCGTTTATGAAAGAGCTCGAGACTTTCTACAGATCAAGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGTGCCATTGAATTGTCTCAAGTTATGGAGATCTGTTATCAAACTTGGTGGCTATGAAGTGGTAACCGGATCAAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCTCCTAAGACCTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAATATGAAAAGCATAAGAGAGAGATTGGAGAGATACAGCTCCCTGTTGGATCACTCCATCAACCTTCAAGTGTGGAAAAAGAGACCGCTGTTTATCAGACTCCAGGCTCAGGTAGGGCGCGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGTCTTATGGGATATGGTGAGGTTGCTGAGTCAGCTGTTAAGGACAAGAACTTCAATCCCACACCAAAACGTGAAAAGAACCTCAAAAATATTGGTGTGATCAACAAACAGAGGACACCATCTGGTATGGACCATGCCGACAAAGCTGCAAATATAGAAGGAGATAGGCAGTTGGTCACAGCAGTAGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATTAATGTGCGGGAAACGAAGGATTGCTTTGAAGTGTATGCACTAGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCCGATCCAGTTGGACGACTTGTTATAACTGGTATGCCGGAACATGTCGACAACCCTTGGGGTATTACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGGATTGATCCACTCCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTATGA 1176 0.4456 MEGGERISDEMDLVHSENRNKDQNAAVNSVHFDQEMLDQGDADTTNVNSTPTHQLEQLITPKPKVKNVTEVNNNVLNSANEMTAYDESGTAMEREAFMKELETFYRSRSLEFKPPKFYGVPLNCLKLWRSVIKLGGYEVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGEIQLPVGSLHQPSSVEKETAVYQTPGSGRARRDAAARAMQGWHAQRLMGYGEVAESAVKDKNFNPTPKREKNLKNIGVINKQRTPSGMDHADKAANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGMPEHVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06036 391 CDD ARID 93 178 - -
Trre6g06036 391 Gene3D - 91 189 IPR036431 GO:0003677
Trre6g06036 391 SMART ARID_2 88 178 - -
Trre6g06036 391 SUPERFAMILY HSP20-like chaperones 299 386 IPR008978 -
Trre6g06036 391 Pfam Hsp20/alpha crystallin family 306 387 IPR002068 -
Trre6g06036 391 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 290 391 IPR002068 -
Trre6g06036 391 ProSiteProfiles ARID domain profile. 91 182 IPR001606 GO:0003677
Trre6g06036 391 SUPERFAMILY ARID-like 82 189 IPR036431 GO:0003677
Trre6g06036 391 Gene3D - 288 390 IPR008978 -
Trre6g06036 391 FunFam AT-rich interactive domain-containing protein 3 282 390 - -
Trre6g06036 391 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 36 388 IPR045147 GO:0006357
Trre6g06036 391 SMART bright_3 92 183 IPR001606 GO:0003677
Trre6g06036 391 CDD ACD_sHsps_p23-like 306 385 - -
Trre6g06036 391 FunFam AT-rich interactive domain-containing protein 3 91 190 - -
Trre6g06036 391 Pfam ARID/BRIGHT DNA binding domain 93 178 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06036 Trre-Chr6 60362010 60367045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06036 76 388 ARID Transcription Factor Family AT1G76510 72.293 4.84e-154 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre6g06036 ARID 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06036 - - psat:127088333 665.225