Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06035 ATGTCTAACCATGATGCTGAGAGAGGCCAAGGGCTTCCGTTATCCATTACACCACAACTACAAGTCCAGACACCGACCATTGATACCACTGTAACAAACAATGGTCAAGCATCATCCTCCGCTGTTGGACGCCGCCCCCGAGGGCGTCCACGTGGAGCCAAGAACAAACCTAAGATGCCCGTCGTAGTAACTCGAGACATATCCAATGCTCTCCAGTCTCATTTGCTTGACATCAATGATGGAGATGATGTTTTGAAATGTCTCTTTAATTTCGCTCATCGTCAAGGGAGAGGGATCCACATCCTCAGTGGAAATGGAGCGGTGAAACACATCACAATTCATCATCCCATGGGAAGGACTATAACCGTAACTAGAAGCTTTGATATTCTTTCGATTTCTGGGAAAATTATCCCATTGTCAACACCGGAAAATGCTGAAGATTTGACGATTTACTTATCAAGTGGTACTGGTAAGGTGATTTGGGGGACTCCCGATCCCACCGCCCCTTTTGTGGCTTCAGGCTTGGTGAAATTGACGGCTATTTCTTTTGCTATCATTCAATAA 564 0.4574 MSNHDAERGQGLPLSITPQLQVQTPTIDTTVTNNGQASSSAVGRRPRGRPRGAKNKPKMPVVVTRDISNALQSHLLDINDGDDVLKCLFNFAHRQGRGIHILSGNGAVKHITIHHPMGRTITVTRSFDILSISGKIIPLSTPENAEDLTIYLSSGTGKVIWGTPDPTAPFVASGLVKLTAISFAIIQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06035 187 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 183 IPR005175 -
Trre6g06035 187 MobiDBLite consensus disorder prediction 14 41 - -
Trre6g06035 187 MobiDBLite consensus disorder prediction 1 59 - -
Trre6g06035 187 Gene3D - 72 183 - -
Trre6g06035 187 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 163 - -
Trre6g06035 187 ProSiteProfiles PPC domain profile profile. 68 187 IPR005175 -
Trre6g06035 187 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 184 IPR014476 GO:0003680
Trre6g06035 187 CDD DUF296 74 162 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06035 Trre-Chr6 60357802 60358365 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06035 44 184 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 44.681 2.86e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06035 - - psat:127088334 173.711