Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06033 ATGAGTGCGAGAGAGGATATGACGTTTAACCATGATGCTGGGAGAGGCAAAGAGCTTCAGTTATCAATTACCCCACAACTACAACCCCAAACACCATGTCTTGATACCATGACTGATAACAACCATCGTGCATCATCCTCTGGTGTCGGCCTCCGCCCGCGAGGGCGTCCACCTGGTGCAAAGAACAAGCCCAAACCGCCTATCGTAATAACACGTGATATTCCCAACATGCTCAATTCTCATTTGCTTGAGATTGCTGCTGGAGATGACGTGTCAAAATGTCTCTATGATTACGTTCGTCACGAAGGGAAAGGCATCTGCATCCTCGATGGAAATGGATCCTTGACAGACGTCAATCTTCGTCAACCCACAGGGGGGATTGTAACCCTAAAGGGAAAGTTTGAGATTCGTTCGATTTCTGGGACAATTCTCCCTTCGTCGACACCAATAGGTGTTGAAGGTTTGACAGTTCACTTATCAAGCAACACTGGACAAATGATTGGGGGGAGTGTGATGCCCCCTCTTGTGTCTTCAGACCCGGTGAAATTGATAATCGCTTCCTTTGATATTGATCCATCTGAAGAGCTGATTTCAGTGGTCGATGGTCAGAAAGAACATGAACCTTCATGCCTTGATGTAGCTGGACAAGTGGCAGAAGGTGATGATGGCTTGTTCAGTGTTGGAGGATCAACATCTGAAATGAGAAATGTGATGGGTAGTAGCACAAGTCATCCCTCATCTTCTGCTTCGATTCGTTTATTTGGACGAGATATCACCGTAACAACAACAACTTCACCACCTAAATCTCCCCGCTTTTAG 819 0.4628 MSAREDMTFNHDAGRGKELQLSITPQLQPQTPCLDTMTDNNHRASSSGVGLRPRGRPPGAKNKPKPPIVITRDIPNMLNSHLLEIAAGDDVSKCLYDYVRHEGKGICILDGNGSLTDVNLRQPTGGIVTLKGKFEIRSISGTILPSSTPIGVEGLTVHLSSNTGQMIGGSVMPPLVSSDPVKLIIASFDIDPSEELISVVDGQKEHEPSCLDVAGQVAEGDDGLFSVGGSTSEMRNVMGSSTSHPSSSASIRLFGRDITVTTTTSPPKSPRF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06033 272 CDD DUF296 79 188 IPR005175 -
Trre6g06033 272 MobiDBLite consensus disorder prediction 21 47 - -
Trre6g06033 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 189 IPR005175 -
Trre6g06033 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 236 IPR014476 GO:0003680
Trre6g06033 272 ProSiteProfiles PPC domain profile profile. 75 209 IPR005175 -
Trre6g06033 272 MobiDBLite consensus disorder prediction 237 272 - -
Trre6g06033 272 Gene3D - 79 204 - -
Trre6g06033 272 MobiDBLite consensus disorder prediction 1 67 - -
Trre6g06033 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06033 Trre-Chr6 60351707 60352525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06033 45 196 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 49.693 9.89e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06033 - - psat:127088334 265.388