Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06032 ATGGCATACCAAAGTTCGGGATCAAGTTCAAGTTCTGGGTTTCAATTGTTGAATTCTCCTTTTGGAGATACAACTTATACTAAGGTTTTTGTTGGGGGATTGGCATGGGAGACTCAGAGTGAAACTATGCGCCGTTATTTTGAACAGTTTGGTGATATTCTCGAAGCGGTCGTCATCACCGATAAGAATACCGGGAGATCCAAAGGCTATGGTTTTGTGACTTTTCGTGATCCAGAAGCCGCTAGGAGAGCTTGTGCTGATCCAAGTCCTGTTATTGATGGTAGAAGAGCTAATTGTAATTTGGCTTCGCTGGGTCGACCACGACCTCCTATCACCTATGGACGGGTAAGACCAGCATCCCCTTATGCTGGAGGTGTGCAACCGGTCCGTGGTGCTTATGTCGGAGGTTATGGCTACCAGCAGCCACTTTCCTATGGCTATCAACAAGGAATGGTTTATCCTCCTTACGGGTATACGACATATGGACCTGAATACGTCTGCCCACAGAGTATGTATGCGGGTCAACAATACCTTCAGATATATGGTGTGCCCGGTGCAGTGAATACGAATATTTATCCTTATGGACAATTGGGTCAAGCTATTCATGGTGGTCATGGTTATACAGCAATGCAAGGTTATACAGTACCAAGTCATCAACTTGTTCCCTATGGTGGTGGATCCAATGTTAATGTAATAACAACTTCATCTATGTCTGCCAATCAAGCACCATATCCTAGTGGAATTGCTACACCAGTTCCAGGCCAACCACAATTTATTGTTTCTCCTCAGTTCATGCAAGGTAGCGGTCCTGACCAAACAACTGATATCCTTAGTTTGCAGCAGGACTAA 849 0.4488 MAYQSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASLGRPRPPITYGRVRPASPYAGGVQPVRGAYVGGYGYQQPLSYGYQQGMVYPPYGYTTYGPEYVCPQSMYAGQQYLQIYGVPGAVNTNIYPYGQLGQAIHGGHGYTAMQGYTVPSHQLVPYGGGSNVNVITTSSMSANQAPYPSGIATPVPGQPQFIVSPQFMQGSGPDQTTDILSLQQD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06032 282 PANTHER BOULE-RELATED 5 240 - -
Trre6g06032 282 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 21 108 - -
Trre6g06032 282 CDD RRM_RBM24_RBM38_like 27 102 - -
Trre6g06032 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 85 IPR000504 GO:0003723
Trre6g06032 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 104 IPR000504 GO:0003723
Trre6g06032 282 Gene3D - 4 116 IPR012677 -
Trre6g06032 282 SMART rrm1_1 28 100 IPR000504 GO:0003723
Trre6g06032 282 SUPERFAMILY RNA-binding domain, RBD 26 140 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06032 Trre-Chr6 60345825 60348882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06032 1 163 C2H2 Transcription Factor Family AT2G19380 30.857 1.98e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06032 - - gmx:100782606 473.011