Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06027 ATGTTAACAATGGAAGATGTACTTTGTGAACTAAGTGAGCATGAGAAGAAAAATGAACAAGGTTTGCCACCTGGGTTTAGGTTTCATCCAACTGATGAAGAACTCATTACCTTTTATTTGGCTTCTAAGGTTTTCAAAAATACTTGTTTCAACAATGTCAAATTTGCTGAGGTTGATCTTAATAGATGTGAGCCATGGGAACTTCCAGAAATGGCAAAGATGGGGGAAAGAGAGTGGTATCTATTCAGCTTAAGAGACAGAAAATATCCAACTGGACTGAGAACAAACAGAGCAACCGGTGCTGGTTACTGGAAAGCCACCGGAAAAGACAAAGAAGTTTACAGCTGCAATAATAATAGATCCTCTTTACTACTACTAGGCATGAAGAAGACTCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTAGATAATCACTTTTCACCTTCTCATCATCCTCATACCTGCAAGGAAGAGTGGGTGATATGTAGGATATTTCATAAATCAGGAGAAAAGAGAAATTCAATACTCCAACTTCAAGGTGGTAATGCTAATGCTAATGCTAATGTTAATTTACCATCCAAAAAAAGTTGTTTACCACCTCCTCCACATTTAATCACTAATCCAACTTCATTTACACAAATAGACCAAAATGACCAATTAATCTCCTCACATTCTCATAACATTTTCCCATTGCAACCATTCCAACCTTCTTCTTTCCAAATCAACCACACTTGCAGAAACAACAATCTCCCATCTTCTGAACTACTTTTCAAGCCACAACAAAATTTCAACATGAAACAAACCATTCCAAAATCAGAGGCTACATTCTATGATCAATACCAATCACAGTCAATTGATGATGCTATTAACCTAAGATGGATTGACAATAATAATAATAATAATAATCATAATTTTGAAAACTCTTCTTCATTCCCTATTGAGATGGATGCAGAATTGATTGAATTCTCAGGAGCTGCTACAAATGCTGAATTTAGGGACATGTCAACTTCAACAAACTTTAACAGTAGAATGGGCTTAGATGTTCCTATGGGAATGGGAATAGATTCTTGGCCACAGGCACAACTTGTCTAA 1128 0.3688 MLTMEDVLCELSEHEKKNEQGLPPGFRFHPTDEELITFYLASKVFKNTCFNNVKFAEVDLNRCEPWELPEMAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSCNNNRSSLLLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDNHFSPSHHPHTCKEEWVICRIFHKSGEKRNSILQLQGGNANANANVNLPSKKSCLPPPPHLITNPTSFTQIDQNDQLISSHSHNIFPLQPFQPSSFQINHTCRNNNLPSSELLFKPQQNFNMKQTIPKSEATFYDQYQSQSIDDAINLRWIDNNNNNNNHNFENSSSFPIEMDAELIEFSGAATNAEFRDMSTSTNFNSRMGLDVPMGMGIDSWPQAQLV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06027 375 Pfam No apical meristem (NAM) protein 23 154 IPR003441 GO:0003677|GO:0006355
Trre6g06027 375 SUPERFAMILY NAC domain 17 179 IPR036093 GO:0003677|GO:0006355
Trre6g06027 375 Gene3D NAC domain 31 184 IPR036093 GO:0003677|GO:0006355
Trre6g06027 375 ProSiteProfiles NAC domain profile. 22 179 IPR003441 GO:0003677|GO:0006355
Trre6g06027 375 FunFam NAC domain-containing protein 100-like 31 183 - -
Trre6g06027 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06027 Trre-Chr6 60326848 60329267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06027 1 188 NAC Transcription Factor Family AT1G76420 72.872 3.30e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre6g06027 NAM 2.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06027 - - gmx:100780313 391.734