Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06019 ATGACTCGTCCCTTCAGATTTCTCGACGAGCTCAACTCGTCTTCTTCTGATTCCACCGTCGTTGATTCCGATTTCGTCGTTATCCTCGCCGCTCTTCTCTGCGCTCTCATCTGCGTTCTAGGTCTCGTCGCCGTCGCACGTTGCGGTTGTCTCCGTCGTCTACGTCTCCCCTCCCCCGCCCTCGCTTCTCAAACTGCACCTCCCGCTGCAGCAAACAAAGGCGTTAAGAAGAAGGTTCTTCGCTCTCTACCCAAACTCACAGCAACAGAGGAATCCGCAGTTAAATTCTCCGATTGTGCTATCTGTTTGAGTGAATTCACCGCCGGTGATGAAATTCGAGTGTTACCTCAGTGCGGTCATGGATTCCACGTGTCCTGTATCGATTTGTGGCTCAGATCTCATTCTTCATGTCCATCGTGCCGTCAGATTTTGGTAGTTCCTAGATGCGATAAGTGCGGCGGAATTCCCGCTCCCGCCACAACTACCGCCGGGTCCAGCTCTACGCCGGCGCCGGATTGTGAAGCTAGATTAAAGGTAAGGGAAGACGATGGAAACCGATTCTTACCATAG 570 0.5263 MTRPFRFLDELNSSSSDSTVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRLPSPALASQTAPPAAANKGVKKKVLRSLPKLTATEESAVKFSDCAICLSEFTAGDEIRVLPQCGHGFHVSCIDLWLRSHSSCPSCRQILVVPRCDKCGGIPAPATTTAGSSSTPAPDCEARLKVREDDGNRFLP 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06019 189 CDD RING-H2_EL5-like 98 141 - -
Trre6g06019 189 SMART ring_2 99 140 IPR001841 -
Trre6g06019 189 SUPERFAMILY RING/U-box 80 147 - -
Trre6g06019 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 145 IPR013083 -
Trre6g06019 189 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Trre6g06019 189 Pfam Ring finger domain 98 141 IPR001841 -
Trre6g06019 189 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06019 Trre-Chr6 60267650 60268219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06019 5 189 C3H Transcription Factor Family AT1G20823 59.184 1.41e-65 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06019 - - pvu:PHAVU_009G007400g 261.922