Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06007 ATGATGAATTTGTTTTATTATTACTGGGTGTTGGTGTTGGTGGTGGTTGTGCTCCCCTATTATTTGGGAGTCAAAGGAGTTTATTCAAATTCAATAACTATTTCAAATGTCTCATTTTCAAGACCCTCCGTTGTTAATATTGGTGCTATTTTCACCTTTGATTCCTCCATTGGTAAAGTTGCTAAACTTGCTATGGAACAAGCTGTCATAGATGTCAACTCTAATTCCTCTATTCTTCATTCAACTCAACTTGTTCTTCATATGCAAACTTCCAATTGTAGTGGTTTTGATGGCATGATTCAAGCTTTGCGGTTCATGGAGACGGATGTAATTGCTATATTAGGACCACAATCTTCTGTAGTTTCTCACATAGTATCCCATGTTGCAAACGAGCTTCGTGTTCCTATGTTGTCATTTGCAGCAACAGACCCTACACTCTCTTCGTTGCAATTTCCTTTCTTTGTCAGGACGACACTCAGTGATTCGTACCAAATGACGGCTGTTTCTGAAATAATTGATTTTTATGGATGGAAGGAAGTTATTGCTATTTATGTAGATGATGATTATGGACGAAACGGTGTGTCTGCGTTAGATGATGCGTTAGCTGGGAGGCGTTGTAGAATTTCCTATAAGGCAGGAATCAAATCAGGACCTGACGTTGATAGAAATGAAATCACCAATTTGCTTGTGAGTGTCGCGATGATGCAGTCTAGGGTTATTGTTGTTCATACACATTCTAATTCTGGATTTATGATCTTCAAAGTTGCGCGATATCTTGGGATGATGCAGGAGGGTTATGTCTGGATAGCGACAGATTGGCTTTCCACTGTTATAGATTCAGGGTCTCTTCATTCGGAGACAATGGATACTCTGCAGGGTGCGCTTGTTTTGCGCCAGCATACGCCTGATACTGATAGGAAGAAAGCGTTTTTATCCAGGTGGAACAAGTTAACCGGTGGTTCCTTGGGGCTAAATTCTTATGGCCTCCAGGCTTATGATTCTGTTTGGCTCGTTGCACAAGCTATTGATAAATTTTTTAGTCAGGGTGGGGTCGTTTCGTGTACCAATTACACAAGTTTGCATGATGATAACGGAAAGGGAGGTGGTCTTAACCTTGATGCCATGAGCATATTTGACAATGGAACACTTCTGTTGAAAAACATATTGCAGACTGATTTTGTTGGATTATCAGGTCCATTGAAATTTGGTTCAGAAAAATCTCCTTATCGTCCTGCCTATGACATCATTAATGTTGTTGGAAATGGTGTTCGTCGAGTTGGCTACTGGTCTAACTATTCTGGTCTGTCAATTGTATCTCCTGAGACGTTGTATGCTAGCCCACCTAATAGATCAATTGCAAACCAGCACCTTCACACTGTGATATGGCCTGGAGAGACATTATCCAGGCCCCGTGGATGGGTCTTCCCAAACAATGGCAAAAAATTGAGAATTGGTGTGCCTATTAGAGCCAGTTTCCGTGAATTTGTCTCACCAGTGAAGGGAACTGATAATTTTAAAGGGTTTTGCATTGATGTATTTATAGCAGCTGTAAACTTGTTACCATATGCCGTTCCTTATCGATTTGTGCCATTCGGAGATGGCCTAAAAAATCCAAGCTACACAGAACTTGTCAACTCAATAACCGCTGGTGTTCTTGATGGTGCTATTGATGACATTGCTATTGTCACAAATCGGACAAGGATTGTAGATTTTACACAGCCATATGCTGCATCTGGACTTGTTGTGGTTGCCCCTTTTAAGAAGATCAATTCCGGCGGTTGGTCTTTCCTGCAGCCGTTCACTCCTTTTATGTGGATTGTGACTGCTTGTTTCTTCTTTTTCGTCGGGATAGTTGTATGGATTCTGGAACACAGGATAAATGATGAGTTCAGAGGTCCACCTAAACAACAAATTATAACCATATTATGGTTTAGTCTGTCGACTCTATTTTTTTCCCACAGAGAGAATACAATGAGTACTCTTGGTCGTGGTGTGATACTCATATGGTTGTTTGTGGTTTTGATCATTAATTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAATTATCTTCATCTATCACTGGAATAGATAGTTTAAAAGCTAGTGATGAACCTATAGGGTTCCAAGTAGGTTCATTTGCGGAACGTTACTTAACTGAAGATCTTGGAATATCCAAATCTAGACTTGTTCCCCTTGGTTCGCCAGAAGAATACGCCAAGTCACTCCAGCTTGGTCCTAATAATAAAGGAGGTGTCGCTGCTATTATAGATGAACGACCCTATGTCGAAATATTCTTATCAACTCAATGCACATACAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGGTGGGGTTTTGCATTCCCTCGGGACTCTCCGTTGGCGGTGGATTTATCAACTGCTATTCTTCAACTTTCAGAAAGTGGTGATCTGCAGCGGATTCATGATAAGTGGATGACACGAAGCACATGTAGTTTAGACAATACCGAAATAGAGTCGGATCGACTTCAGCTCAAAAGCTTTTGGGGTCTATTCATCATTTGTGGAATGGCTTGCTTTATTGCTCTTGTGATACATTTTTTGCAGATTTTGTTACAGTTAAGGCATTCAGGTACTTCTGAATCAGCTTCTAATGTTGGCCCAATTAAAAGATTTCTTTCACTCATTGATGAGAAGGAAAGTCCATCAAGGAGTGAAAGAAGAAAGAGGAATGGAGATGAAATATCAGCTGAAGATCAGCTTGGAAGACAATCAAAGAGGATACAAAGAGTAACAGCAGCATAG 2796 0.407 MMNLFYYYWVLVLVVVVLPYYLGVKGVYSNSITISNVSFSRPSVVNIGAIFTFDSSIGKVAKLAMEQAVIDVNSNSSILHSTQLVLHMQTSNCSGFDGMIQALRFMETDVIAILGPQSSVVSHIVSHVANELRVPMLSFAATDPTLSSLQFPFFVRTTLSDSYQMTAVSEIIDFYGWKEVIAIYVDDDYGRNGVSALDDALAGRRCRISYKAGIKSGPDVDRNEITNLLVSVAMMQSRVIVVHTHSNSGFMIFKVARYLGMMQEGYVWIATDWLSTVIDSGSLHSETMDTLQGALVLRQHTPDTDRKKAFLSRWNKLTGGSLGLNSYGLQAYDSVWLVAQAIDKFFSQGGVVSCTNYTSLHDDNGKGGGLNLDAMSIFDNGTLLLKNILQTDFVGLSGPLKFGSEKSPYRPAYDIINVVGNGVRRVGYWSNYSGLSIVSPETLYASPPNRSIANQHLHTVIWPGETLSRPRGWVFPNNGKKLRIGVPIRASFREFVSPVKGTDNFKGFCIDVFIAAVNLLPYAVPYRFVPFGDGLKNPSYTELVNSITAGVLDGAIDDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPFMWIVTACFFFFVGIVVWILEHRINDEFRGPPKQQIITILWFSLSTLFFSHRENTMSTLGRGVILIWLFVVLIINSSYTASLTSILTVQQLSSSITGIDSLKASDEPIGFQVGSFAERYLTEDLGISKSRLVPLGSPEEYAKSLQLGPNNKGGVAAIIDERPYVEIFLSTQCTYRIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSESGDLQRIHDKWMTRSTCSLDNTEIESDRLQLKSFWGLFIICGMACFIALVIHFLQILLQLRHSGTSESASNVGPIKRFLSLIDEKESPSRSERRKRNGDEISAEDQLGRQSKRIQRVTAA 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06007 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 331 343 - -
Trre6g06007 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Trre6g06007 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Trre6g06007 931 MobiDBLite consensus disorder prediction 895 922 - -
Trre6g06007 931 Gene3D - 160 435 - -
Trre6g06007 931 Gene3D - 755 788 - -
Trre6g06007 931 Gene3D - 477 591 - -
Trre6g06007 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 45 882 IPR015683 -
Trre6g06007 931 Pfam Bacterial extracellular solute-binding proteins, family 3 502 824 IPR001638 -
Trre6g06007 931 PRINTS Metabotropic glutamate GPCR signature 145 164 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trre6g06007 931 PRINTS Metabotropic glutamate GPCR signature 113 139 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trre6g06007 931 PRINTS Metabotropic glutamate GPCR signature 180 197 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trre6g06007 931 PRINTS Metabotropic glutamate GPCR signature 164 180 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trre6g06007 931 Pfam Receptor family ligand binding region 62 420 IPR001828 -
Trre6g06007 931 Gene3D - 592 718 - -
Trre6g06007 931 FunFam Glutamate receptor 593 723 - -
Trre6g06007 931 CDD PBP1_GABAb_receptor_plant 46 438 IPR044440 -
Trre6g06007 931 Gene3D - 63 410 - -
Trre6g06007 931 FunFam Glutamate receptor 477 592 - -
Trre6g06007 931 FunFam Glutamate receptor 719 827 - -
Trre6g06007 931 SMART GluR_14 483 825 IPR001320 GO:0015276|GO:0016020
Trre6g06007 931 Pfam Ligand-gated ion channel 825 856 IPR001320 GO:0015276|GO:0016020
Trre6g06007 931 CDD GluR_Plant 480 822 - -
Trre6g06007 931 SUPERFAMILY Periplasmic binding protein-like I 39 474 IPR028082 -
Trre6g06007 931 MobiDBLite consensus disorder prediction 895 931 - -
Trre6g06007 931 FunFam Glutamate receptor 160 313 - -
Trre6g06007 931 Gene3D - 789 822 - -
Trre6g06007 931 PIRSF IGluLR_plant 2 930 IPR017103 -
Trre6g06007 931 SUPERFAMILY Periplasmic binding protein-like II 457 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06007 Trre-Chr6 60209536 60213148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06007 40 910 Ion Channels AT1G42540 64.447 0.0 1207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06007 K05387 - gmx:102661260 1426.77