Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06006 ATGTATGATTTTGAAGAGATTGTTATGCCTTTGGATATGGAATTTTCTACTCCAATTACAATATTAGAAGGTGATGATTATAACAAAGACAATGCTTTTAAGGTTATTCATGATGATGATAATAATGATGATGAGAAATTAGAGGATTTCAATAATCTAAAACCAACCACAATTGGTAAGCCTCCAAGGCATGCATCAAGTTTGAGACACAGCCTTAGCTCCACCAGATTGATGGTGGCTTCATCAGATTTGACTGCGGATGCTGAGGTTACTGGGAGTAAATCATCTTCTGAAGATAAGACAGAGTTTGTACCCATATTTAGGTCGGGAAGTTGTGCTGAAAGAGGACCTAAACAATATATGGAAGATGAACACATATGTATAGATGATCTTAATCAACACATAGGTTCTGCTTCCAATATTCCTTTTCCTGGAGCTTTCTATGGGGTGTTTGATGGTCACGGAGGAACAGACGCTGCTTTGTTTGTAAGAAATAACCTTCTTAGACTCATTGTTGAGGACTCCCAGTTTCCAACTTGTGTGGGGAAGGCAATTACAAGTGCATTTATGAAAGCCGATTATGCATTTGCAGATTCCAGTTCGCTTGATATCTCCTCTGGCACTACTGCTTTAACTGCTCTTGTATTTGGGAGGACCATGATAATTGCAAATGCGGGGGATTGTCGAGCTGTACTGGGGAGACGAGGTAGAGCAATTGAAATGTCAAGAGACCAGAAACCAAATTGCACTTCAGAAAGGCTAAGGATTGAAAAACTTGGTGGAGTGGTATATGATGGATACTTGAATGGCCAATTATCCGTTTCACGTGCCTTAGGAGACTGGCACATGAAGGGTCCCAAGGGTTCTGCCTGCCCTTTGAGTGCCGAGCCAGAGTTGCAGGAAACCTTATTGTCTGAGGATGATGAATTCTTGATTATGGGCTGTGATGGCCTGTGGGATGTAATGAGTAACCAATGTGCTGTGACCATGGCAAGAAAAGAGTTGATGATACATAATGATCCTCAAAGGTGTTCAAGAGAGTTGGTCAGAGAGGCTCTTAAGCGTAACTCGTGTGATAATTTAACAGTTATTGTGGTATGTTTCTCCCCGGATCCTCCTCCTAGGATAGAGATACCTCCTTCTCGAGTCAGGAGGAGTATATCAGCAGAAAGCCTCACTTTACTTAAGGGTGTATTAGAGTGTTAG 1206 0.4154 MYDFEEIVMPLDMEFSTPITILEGDDYNKDNAFKVIHDDDNNDDEKLEDFNNLKPTTIGKPPRHASSLRHSLSSTRLMVASSDLTADAEVTGSKSSSEDKTEFVPIFRSGSCAERGPKQYMEDEHICIDDLNQHIGSASNIPFPGAFYGVFDGHGGTDAALFVRNNLLRLIVEDSQFPTCVGKAITSAFMKADYAFADSSSLDISSGTTALTALVFGRTMIIANAGDCRAVLGRRGRAIEMSRDQKPNCTSERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSAEPELQETLLSEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVVCFSPDPPPRIEIPPSRVRRSISAESLTLLKGVLEC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06006 401 SMART PP2C_SIG_2 123 368 IPR001932 -
Trre6g06006 401 PANTHER PROTEIN PHOSPHATASE 2C 93 366 IPR015655 GO:0004722|GO:0006470
Trre6g06006 401 SUPERFAMILY PP2C-like 103 369 IPR036457 -
Trre6g06006 401 Gene3D - 85 371 IPR036457 -
Trre6g06006 401 FunFam Probable protein phosphatase 2C 22 92 371 - -
Trre6g06006 401 ProSitePatterns PPM-type phosphatase domain signature. 147 155 IPR000222 GO:0043169
Trre6g06006 401 CDD PP2Cc 107 368 IPR001932 -
Trre6g06006 401 ProSiteProfiles PPM-type phosphatase domain profile. 108 368 IPR001932 -
Trre6g06006 401 Pfam Protein phosphatase 2C 109 360 IPR001932 -
Trre6g06006 401 SMART PP2C_4 98 366 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06006 Trre-Chr6 60201073 60203445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06006 11 400 PP2C-type Phosphatase Gene Family AT2G33700 71.684 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06006 K14803 - gmx:100778015 624.009