Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06001 ATGTCTTCTAGCTGGGATGGAAGTAATGACCCTGGCAGTCAGTCAGATGATAGTTTTATGTTTGAGAGGATGCATATTGAACCTATTTATGATGCTTTTGTATGTCCTTTGACGAAGCAAGTTATGCGCGATCCTGTTACTTCTGAAAACGGGCAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAGGGAGAGTGGACGGAAACTGGTTTGTCCCTTGACTCTGCGAGAGTTAAAAAGTGCGGAATTGAATCCTAGTATGGCTTTGCGAAACACTATTGAAGAGTGGACTGCTAGGAACGAAGCTGCACAGCTGGATATGGCTCGGCGTTCATTGAATACTGGGAGTCCAGAAAAGGAAACCCTTCAGGCTTTGAGGTATGTCCAGCACATCTGTCAAAGAAGTCGGTCGAATAAACATGTTGTCCGCAGTGCAGGGCTTATACCAATGATTGTTGATATGCTCAAGAGTGGCAGCCGCAAAGTTCGCTGTAGAGCTCTTGAAACCCTTAGAATTGTGGTAGAAGGAGACGATGAGAATAAGGAACTGTTGGCTGAAGGGGACACTGTGCGTACTGTAGTAAAATTTCTTTCTCACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTATGAACTGTCAAAATCAGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGATCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGACCTTTCCACTGTTGAGAAGGCTGATAAAACATTAGAGAATCTGGAAAAATACGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTCTAAACCATCTTCTTGAAGGTCCACCAGAAACCAAACTGTCCATGGCTGGAATCCTTGGTGAGCTGGTTTTGGACAATGATGTTAAAGTCCTTGTTGCTAGAACTGTGGGCTCATCTCTGATCAATATCATGAAAAGTGGCAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGCGAGCCAAGCGCAAAGGTTTTAATAGAAGCTGGAATACTTTCCCCTCTTGTCAATGACCTTTTTGCAGTGGGCCCTAATCTGCTGCCAACTCGACTAAAAGAGGTCTCTGCTACAATTCTCGCCAGTGTTGTGAATTCAGGAGAAGACTTTGATTCGATTCCACTTGGACCTGATCACCAAACTCTGGTCTCGGAGGATATAGTCCATAAGCTACTACATCTTATTAGCAACACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTGCTAGTTCTCCAACTACAGTGCTGAGTCTTGTTTCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTTCAGTTCATCGAGGCACCGCAGAAAGATCTGCGTTTAGCTTCCATAAAACTTCTTCAGAATTTGTCTCCCCACATGGGCCCGGAATTAGCCGATGCGCTTCGTGGCTCAGTGGGACAGCTTAGTAGTCTAGTTAAAGTCATATCAGAAAATATCGGAATCACTGAAGAGCAGGCAGCTGCTGTTGGCCTCTTAGCTGATCTACCGGAGAGAGATTTAGGCCTCACGAGACAGCTTCTGGATGAAGGTGCCTTTCGGATGGCCATATCCAAGGTGATTGCTATCAGGCAGGGAGAGATCAGAGGCACTCGGTTCGTGACACCATTTCTTGAAGGGCTTATGAAGATTGTTGCAAGGGTTACATATGTCTTGGCTGATGAGCCTGATGCTGTTGCACTTTGCCGTGATCAAAATCTTGCTGCACTCTTCATTGAACTGCTACAGACCAATGGACTTGATAATGTACAGATGGTTTCTGCTATAGCTTTGGAGAATTTATCCCTAGAATCAAAGAATTTAACCAAATTGCCCGAGGTGCCAGAACCGACCTTTTGTGCTTCATTCTTCTCGTGTTTCAGTCCACCGCCAGTCGTTACTGGGTCATGTAGGATCCACCGTGGGAAGTGTTCTTTAAAAGAAACATTTTGTCTTTACGAAGGACAGGCGGTCCTTAAGTTAGTAGCTCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTATGTACTGTAATAGATGATGGAGTAGATATTGAGCAAGGTGTACTGGTTTTGTGTGAAGCAGAGGGAGTGAAACCTATACTTGACGTGTTACTCGAGAAACAAACAGACAATTTGAGGAGAAGGGCAGTTTGGGCAGTGGAGAGATTGTTGCGAACGGACGAGATAGCCTACGAAGTTTCTGGAGATCAAAATGTGAGTACTGCACTTGTGGATGCTTTCCAACACGGTGATTATCGAACTAGGCAGATTGCTGAGCGTGCCCTCAAGCATGTTGATAAGATACCTAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2442 0.4439 MSSSWDGSNDPGSQSDDSFMFERMHIEPIYDAFVCPLTKQVMRDPVTSENGQTFEREAIEKWFKECRESGRKLVCPLTLRELKSAELNPSMALRNTIEEWTARNEAAQLDMARRSLNTGSPEKETLQALRYVQHICQRSRSNKHVVRSAGLIPMIVDMLKSGSRKVRCRALETLRIVVEGDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGSILILVGMTSSKSEDLSTVEKADKTLENLEKYENNVRQMAENGRLQPLLNHLLEGPPETKLSMAGILGELVLDNDVKVLVARTVGSSLINIMKSGNMQSREAALKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPNLLPTRLKEVSATILASVVNSGEDFDSIPLGPDHQTLVSEDIVHKLLHLISNTGPAIECKLLQVLVGLASSPTTVLSLVSAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGPELADALRGSVGQLSSLVKVISENIGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFRMAISKVIAIRQGEIRGTRFVTPFLEGLMKIVARVTYVLADEPDAVALCRDQNLAALFIELLQTNGLDNVQMVSAIALENLSLESKNLTKLPEVPEPTFCASFFSCFSPPPVVTGSCRIHRGKCSLKETFCLYEGQAVLKLVALLDHTNVNVVEAALAALCTVIDDGVDIEQGVLVLCEAEGVKPILDVLLEKQTDNLRRRAVWAVERLLRTDEIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06001 813 Gene3D - 115 316 IPR011989 -
Trre6g06001 813 CDD RING-Ubox_PUB 30 87 IPR045210 -
Trre6g06001 813 SMART arm_5 347 392 IPR000225 GO:0005515
Trre6g06001 813 SMART arm_5 672 713 IPR000225 GO:0005515
Trre6g06001 813 SMART arm_5 139 179 IPR000225 GO:0005515
Trre6g06001 813 SMART arm_5 717 759 IPR000225 GO:0005515
Trre6g06001 813 SMART arm_5 181 221 IPR000225 GO:0005515
Trre6g06001 813 SMART arm_5 307 346 IPR000225 GO:0005515
Trre6g06001 813 SMART arm_5 265 306 IPR000225 GO:0005515
Trre6g06001 813 SMART arm_5 590 631 IPR000225 GO:0005515
Trre6g06001 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Trre6g06001 813 SUPERFAMILY RING/U-box 24 110 - -
Trre6g06001 813 SUPERFAMILY ARM repeat 115 367 IPR016024 -
Trre6g06001 813 Gene3D - 317 486 IPR011989 -
Trre6g06001 813 Gene3D - 574 803 IPR011989 -
Trre6g06001 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Trre6g06001 813 Coils Coil 256 276 - -
Trre6g06001 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 114 IPR013083 -
Trre6g06001 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 809 - -
Trre6g06001 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Trre6g06001 813 SUPERFAMILY ARM repeat 246 757 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06001 Trre-Chr6 60171189 60174928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06001 2 813 U-box Gene Family AT1G76390 65.479 0.0 1035