Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g06000 ATGATGTCTTCTAGCTGGGATGGAAGTAATGACCCTGGCAGTCAGTCAGATGATAGTTTTATGTTTGAGAGGATGCATATTGAACCTATTTATGATGCTTTTGTATGTCCTTTGACGAAGCAAGTTATGCGCGATCCTGTTACTTCTGAAAACGGGCAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAGGGAGAGTGGACGGAAACTGGTTTGTCCCTTGACTCTGCGAGAGTTAAAAAGTGCGGAATTGAATCCTAGTATGGCTTTGCGAAACACTATTGAAGAGTGGACTGCTAGGAACGAAGCTGCACAGCTGGATATGGCTCGGCGTTCATTGAATACTGGGAGTCCAGAAAAGGAAACCCTTCAGGCTTTGAGGTATGTCCAGCACATCTGTCAAAGAAGTCGGTCGAATAAACATGTTGTCCGCAGTGCAGGGCTTATACCAATGATTGTTGATATGCTCAAGAGTGGCAGCCGCAAAGTTCGCTGTAGAGCTCTTGAAACCCTTAGAATTGTGGTAGAAGGAGACGATGAGAATAAGGAACTGTTGGCTGAAGGGGACACTGTGCGTACTGTAGTAAAATTTCTTTCTCACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTATGAACTGTCAAAATCAGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGATCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGACCTTTCCACTGTTGAGAAGGCTGATAAAACATTAGAGAATCTGGAAAAATACGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTCTAAACCATCTTCTTGAAGGTCCACCAGAAACCAAACTGTCCATGGCTGGAATCCTTGGTGAGCTGGTTTTGGACAATGATGTTAAAGTCCTTGTTGCTAGAACTGTGGGCTCATCTCTGATCAATATCATGAAAAGTGGCAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGCGAGCCAAGCGCAAAGGTTTTAATAGAAGCTGGAATACTTTCCCCTCTTGTCAATGACCTTTTTGCAGTGGGCCCTAATCTGCTGCCAACTCGACTAAAAGAGGTCTCTGCTACAATTCTCGCCAGTGTTGTGAATTCAGGAGAAGACTTTGATTCGATTCCACTTGGACCTGATCACCAAACTCTGGTCTCGGAGGATATAGTCCATAAGCTACTACATCTTATTAGCAACACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTGCTAGTTCTCCAACTACAGTGCTGAGTCTTGTTTCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTTCAGTTCATCGAGGCACCGCAGAAAGATCTGCGTTTAGCTTCCATAAAACTTCTTCAGAATTTGTCTCCCCACATGGGCCCGGAATTAGCCGATGCGCTTCGTGGCTCAGTGGGACAGCTTAGTAGTCTAGTTAAAGTCATATCAGAAAATATCGGAATCACTGAAGAGCAGGCAGCTGCTGTTGGCCTCTTAGCTGATCTACCGGAGAGAGATTTAGGCCTCACGAGACAGCTTCTGGATGAAGGTGCCTTTCGGATGGCCATATCCAAGGTGATTGCTATCAGGCAGGGAGAGATCAGAGGCACTCGGTTCGTGACACCATTTCTTGAAGGGCTTATGAAGATTGTTGCAAGGGTTACATATGTCTTGGCTGATGAGCCTGATGCTGTTGCACTTTGCCGTGATCAAAATCTTGCTGCACTCTTCATTGAACTGCTACAGACCAATGGACTTGATAATGTACAGATGGTTTCTGCTATAGCTTTGGAGAATTTATCCCTAGAATCAAAGAATTTAACCAAATTGCCCGAGGTGCCAGAACCGACCTTTTGTGCTTCATTCTTCTCGTGTTTCAGTCCACCGCCAGTCGTTACTGGGTCATGTAGGATCCACCGTGGGAAGTGTTCTTTAAAAGAAACATTTTGTCTTTACGAAGGACAGGCGGTCCTTAAGTTAGTAGCTCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTATGTACTGTAATAGATGATGGAGTAGATATTGAGCAAGGTGTACTGGTTTTGTGTGAAGCAGAGGGAGTGAAACCTATACTTGACGTGTTACTCGAGAAACAAACAGACAATTTGAGGAGAAGGGCAGTTTGGGCAGTGGAGAGATTGTTGCGAACGGACGAGATAGCCTACGAAGTTTCTGGAGATCAAAATGTGAGTACTGCACTTGTGGATGCTTTCCAACACGGTGATTATCGAACTAGGCAGATTGCTGAGCGTGCCCTCAAGCATGTTGATAAGATACCTAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2445 0.4438 MMSSSWDGSNDPGSQSDDSFMFERMHIEPIYDAFVCPLTKQVMRDPVTSENGQTFEREAIEKWFKECRESGRKLVCPLTLRELKSAELNPSMALRNTIEEWTARNEAAQLDMARRSLNTGSPEKETLQALRYVQHICQRSRSNKHVVRSAGLIPMIVDMLKSGSRKVRCRALETLRIVVEGDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGSILILVGMTSSKSEDLSTVEKADKTLENLEKYENNVRQMAENGRLQPLLNHLLEGPPETKLSMAGILGELVLDNDVKVLVARTVGSSLINIMKSGNMQSREAALKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPNLLPTRLKEVSATILASVVNSGEDFDSIPLGPDHQTLVSEDIVHKLLHLISNTGPAIECKLLQVLVGLASSPTTVLSLVSAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGPELADALRGSVGQLSSLVKVISENIGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFRMAISKVIAIRQGEIRGTRFVTPFLEGLMKIVARVTYVLADEPDAVALCRDQNLAALFIELLQTNGLDNVQMVSAIALENLSLESKNLTKLPEVPEPTFCASFFSCFSPPPVVTGSCRIHRGKCSLKETFCLYEGQAVLKLVALLDHTNVNVVEAALAALCTVIDDGVDIEQGVLVLCEAEGVKPILDVLLEKQTDNLRRRAVWAVERLLRTDEIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g06000 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 810 - -
Trre6g06000 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Trre6g06000 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Trre6g06000 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Trre6g06000 814 Gene3D - 318 487 IPR011989 -
Trre6g06000 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 115 IPR013083 -
Trre6g06000 814 Gene3D - 575 804 IPR011989 -
Trre6g06000 814 SUPERFAMILY RING/U-box 25 111 - -
Trre6g06000 814 SUPERFAMILY ARM repeat 247 758 IPR016024 -
Trre6g06000 814 SMART arm_5 348 393 IPR000225 GO:0005515
Trre6g06000 814 SMART arm_5 140 180 IPR000225 GO:0005515
Trre6g06000 814 SMART arm_5 673 714 IPR000225 GO:0005515
Trre6g06000 814 SMART arm_5 182 222 IPR000225 GO:0005515
Trre6g06000 814 SMART arm_5 718 760 IPR000225 GO:0005515
Trre6g06000 814 SMART arm_5 308 347 IPR000225 GO:0005515
Trre6g06000 814 SMART arm_5 591 632 IPR000225 GO:0005515
Trre6g06000 814 SMART arm_5 266 307 IPR000225 GO:0005515
Trre6g06000 814 Gene3D - 116 317 IPR011989 -
Trre6g06000 814 Coils Coil 257 277 - -
Trre6g06000 814 CDD RING-Ubox_PUB 31 88 IPR045210 -
Trre6g06000 814 SUPERFAMILY ARM repeat 116 368 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g06000 Trre-Chr6 60171186 60174928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g06000 3 814 U-box Gene Family AT1G76390 65.479 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g06000 - - gmx:100789746 1406.73