Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05985 ATGGAAACAGAGAACGATAATTCCTCAAAATCAAATGGTATTATTATTGGAGGAGGAAGCAACCTTTATGTGAAAGTGATGACCGATGAACAATTGGAACTTCTCAGACAACAAATTTCTGTTTACATTACCATTTCTGACCAGCTTGTTCAGATGCACAAATCCATCACCAATCAACACGACCTTGCTGGACTAAGGTTGGGTAATCTGTACTGTGATCCACTGATGGCATGCTCTGGACACAAGATAACTTCTAGGCAGCGTTGGACACCAACGCCTATACAGCTTCAAATACTCGAGCGGATTTTCGATGAAGGCACTGGAACTCCCTCCAAACAGAAGATCAAAGATATAACCAATGAACTCGGGCAACACGGCCAAATATCTGAGACTAATGTTTATAATTGGTTCCAGAATAGAAGAGCTCGGTCAAAGCGCAAGCAATCGGCTCCTACAACAAATCAATCAGAAGAACCAGAACCGGAGACAGAAGTTGAGTCTCCAAAAGAGAACAAAACACACGAAGAATGCGATCATGTTCAATTCTTTGAGAATTTATCACCTCATAGTTTCAAGGATATGTACATTCAAAGTCCTGACATAGGATTTGAGCACATGTTGAGTAAAATTGAAGTTTCAAGCTGTTATAGTTCCTACCTTCTTTGA 666 0.4039 METENDNSSKSNGIIIGGGSNLYVKVMTDEQLELLRQQISVYITISDQLVQMHKSITNQHDLAGLRLGNLYCDPLMACSGHKITSRQRWTPTPIQLQILERIFDEGTGTPSKQKIKDITNELGQHGQISETNVYNWFQNRRARSKRKQSAPTTNQSEEPEPETEVESPKENKTHEECDHVQFFENLSPHSFKDMYIQSPDIGFEHMLSKIEVSSCYSSYLL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05985 221 SMART HOX_1 84 151 IPR001356 GO:0003677
Trre6g05985 221 CDD homeodomain 86 148 IPR001356 GO:0003677
Trre6g05985 221 Gene3D - 87 153 - -
Trre6g05985 221 MobiDBLite consensus disorder prediction 141 174 - -
Trre6g05985 221 PANTHER WUSCHEL-RELATED HOMEOBOX 13 14 205 IPR044559 GO:0003700
Trre6g05985 221 Pfam Homeodomain 86 146 IPR001356 GO:0003677
Trre6g05985 221 SUPERFAMILY Homeodomain-like 85 149 IPR009057 -
Trre6g05985 221 ProSiteProfiles 'Homeobox' domain profile. 82 147 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05985 Trre-Chr6 60084574 60086397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05985 22 173 Wox Gene Family AT4G35550 68.182 4.86e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre6g05985 Homeodomain 4.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05985 - - gmx:100820530 319.316