Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05982 ATGAAAGGAGGAAAGTCCAAGGGTGAATCGAAGAAAGCTGAGACTAAGCTTGCTGTGAATAAGAAGGGTGCTCCCGCTACTAAGGGCGGAAGGAAACCAGCCAAGGGAAAGGAACCAAAAGACCCTAACAAGCCAAAGAGGCCTGCAAGTGCTTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAGGAAAACCCTGACAACAGAGCTGTGTCCGCGGTGGGCAAAGCTGCTGGAGCAAAATGGAAGTCATTGTCTGAAGCTGAGAAAGCACCATATGCTGCAAAAGCTGAAAAAAGAAAGGCTGAATATGAGAAGGCCATTAGGGCATATAACAAGAAACAGGCTGAAGGTCCAGCTGCTGCTGATGAAGAGGAATCTGAGAAATCAGAATCTGAGGTGCATGACGAGAATGATGATGACGAGGATGGCAGTGACGAGGAGGATGATGACGAGTAG 465 0.471 MKGGKSKGESKKAETKLAVNKKGAPATKGGRKPAKGKEPKDPNKPKRPASAFFVFMEEFRKQFNKENPDNRAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKAIRAYNKKQAEGPAAADEEESEKSESEVHDENDDDEDGSDEEDDDE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05982 154 Gene3D High mobility group box domain 29 127 IPR036910 -
Trre6g05982 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Trre6g05982 154 CDD HMG-box_AtHMGB1-like 46 106 - -
Trre6g05982 154 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Trre6g05982 154 MobiDBLite consensus disorder prediction 1 51 - -
Trre6g05982 154 Coils Coil 96 119 - -
Trre6g05982 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Trre6g05982 154 MobiDBLite consensus disorder prediction 31 45 - -
Trre6g05982 154 MobiDBLite consensus disorder prediction 128 154 - -
Trre6g05982 154 MobiDBLite consensus disorder prediction 94 127 - -
Trre6g05982 154 SUPERFAMILY HMG-box 36 118 IPR036910 -
Trre6g05982 154 MobiDBLite consensus disorder prediction 1 18 - -
Trre6g05982 154 SMART hmgende2 44 115 IPR009071 -
Trre6g05982 154 MobiDBLite consensus disorder prediction 79 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05982 Trre-Chr6 60072550 60073871 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre6g05982 HMG_box 9.8e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05982 K25507 - lang:109352139 162.54