Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05977 ATGAGTTGTTTTTCTTGCTTTGTTTCTCGGAGCAACAAAGATGTTAGCAGGGTTGAAGTTGATAATGGTTCTCGATCTGCTCATACTCAAGGAAATGGAGGAACCAATGTTTCAGAGAGTGAAAGGAAGAAAGAATATTCAGAGGGAAAGGGGAAGAATGTGAGGAGTGGCAAAAGCAGTACTGCGGCAGCTAGTTTCGGTTTTCGCGAGCTTGCATTAGCTACAAGGGGTTTTAATGAAGCCAATTTGATTGGAGAAGGTGGTTTTGGAAAAGTTTTTAAGGGCCGGCTTTCGACCAACGAGCTTGTTGCTGTAAAACAATTAAGTCATGATGGTCGTCAAGGTTTTCAAGAATTTGTGACTGAGGTTCTTATGCTAAGTCTGCTGCATCATTCTAATCTTGTTAAGTTAATTGGCTATTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCGATGGGATCTCTGGAGGATCATCTTTTTGATGTTGCCCCAGACAAAGAACCTCTAAGTTGGAGTTCTCGAATGAAGATTGCTGTTGGAGCAGCTCGGGGCCTTGAGTATCTCCATTGTAAAGCAGACCCGCCTGTTATATATCGAGACTTGAAATCTGCAAACATCTTATTAGACAGTGACTTCAGCCCAAAACTGTCAGATTTTGGGCTTGCTAAACTAGGACCTGTTGGAGACAACACTCATGTTTCAACCAGAGTGATGGGTACATATGGCTACTGTGCGCCAGAATATGCGATGAGTGGCAAATTAACCCTCAAATCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACCGGACGCAGGGCAATAGATACAAGCAAAAAACCAGGAGAGCAAAACTTAGTTTCATGGTCTCGCCCATATTTTAACGACCGGAGAAAGTTTGTACACATGGCTGACCCTCTTTTGCAAGGACGCTTCCCCACCCGCTGTTTGCATCAAGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCAAAATTCCGTCCACTCATAGGTGATATTGTTGTTGCACTGGAATACCTAGCTTCTCAGAGTACCTCTGAAGTCCATGGACATGGTGTGCGCAGCCCACTGCTGCAATCGCATCCCGAAATGCACAGAAGTTAA 1146 0.4389 MSCFSCFVSRSNKDVSRVEVDNGSRSAHTQGNGGTNVSESERKKEYSEGKGKNVRSGKSSTAAASFGFRELALATRGFNEANLIGEGGFGKVFKGRLSTNELVAVKQLSHDGRQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDVAPDKEPLSWSSRMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDSDFSPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDTSKKPGEQNLVSWSRPYFNDRRKFVHMADPLLQGRFPTRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQSTSEVHGHGVRSPLLQSHPEMHRS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05977 381 ProSiteProfiles Protein kinase domain profile. 78 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05977 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Trre6g05977 381 MobiDBLite consensus disorder prediction 11 58 - -
Trre6g05977 381 FunFam Serine/threonine-protein kinase PBS1 154 368 - -
Trre6g05977 381 Gene3D Phosphorylase Kinase; domain 1 50 153 - -
Trre6g05977 381 CDD STKc_IRAK 84 352 - -
Trre6g05977 381 MobiDBLite consensus disorder prediction 38 52 - -
Trre6g05977 381 Pfam Protein kinase domain 79 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05977 381 Gene3D Transferase(Phosphotransferase) domain 1 154 368 - -
Trre6g05977 381 SUPERFAMILY Protein kinase-like (PK-like) 60 352 IPR011009 -
Trre6g05977 381 SMART serkin_6 78 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05977 381 PANTHER OS07G0668900 PROTEIN 3 360 - -
Trre6g05977 381 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Trre6g05977 381 MobiDBLite consensus disorder prediction 22 37 - -
Trre6g05977 381 FunFam probable serine/threonine-protein kinase RLCKVII 50 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05977 Trre-Chr6 60035745 60038643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05977 1 356 Glycoside Hydrolase AT3G07070 60.000 8.85e-154 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre6g05977 Pkinase 7.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05977 - - gmx:100796595 580.482