Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05976 ATGGGAAACTGTTTCACAAATTCAGCCGTTGACAATAAGACTACTAATTCAACTGTCTATAAACAACACAAAACTACTTCTTCTGCAGATGATGAGAGAAGTACTGTTGGAGCAAAAATCGCGGCAGTGGAGAAGGAAAGAGGCAGGGAGAGCGTGGTTGGAAAAATTGTGACGCCGAATCTTAAAATGTTTACATTGGATGAGTTGAAAAGTGCGACAAGAAACTTCAGACCAGACACGGTGCTCGGTGAAGGTGGTTTTGGGCGTGTTTTCAAAGGATGGATCGACGAAAATACTTTAAAACCATCCAAAGTTGGTGTTGGAATTCCGGTTGCTGTCAAGAAATCGAACGCCGATAGTCTCCAAGGTTTACAAGAATGGCAGTCTGAAGTGAAATTTTTAGGAAAATTCTCTCATCCAAATCTTGTTAAACTACTTGGCTACTGCTGGGAGGATAATCAATTCCTGTTGGTCTACGAATGCATGCAAAAGGGCAGCTTGGAAAGTCATCTTTTCAGAAGCCCTGAACCACTTTCTTGGGAAATAAGGTTGAGGATAGCCATAGGAGCTGCTAAAGGTTTGGCTTTTTTGCACACTTCAGAAAAGTCTGTTATTTATAGAGACTTCAAGTCCTCCAACATTTTGCTTGATGGGGACTTTAATGCAAAGTTGTCTGATTTTGGGTTGGCCAAGCTTGGGCCTGTAAATGGTAGATCACATGTAACCACAAGAATCATGGGCACATATGGTTATGCAGCTCCTGAGTACATGGCTACAGGTCATCTGTATGTGAAAAGTGATGTGTATGGATTTGGTGTTGTGCTTCTAGAAATGTTAACAGGTTTAATAGCATTGGACCCAAATAGGCCAGCAAATGAGATGAATTTGGTGGAATTTACAAAGAGCTCTCTAGGTGACAAAAAGAAACTCAAAAGAATAATGGATCAAAGATTGGACAAAAAATATCCATTAACATCAGCATTTTTAATAGCCCAACTTATACTCAAATGTTTAGAATCTGACCCAAAAAATAGACCATCTATGGAAAAAGTTTTGGAAACTTTAGAAAAAGCTCAAACCATCAAAGTTAAACCTAAAGTGAAGAAATCAAGAAGCTCTGTGCATCAAAAAACTAAAAGTTCAAATGAGCATAATGGTCACTCCAAATTACGAACTCATTCTCTTCAATAG 1191 0.3896 MGNCFTNSAVDNKTTNSTVYKQHKTTSSADDERSTVGAKIAAVEKERGRESVVGKIVTPNLKMFTLDELKSATRNFRPDTVLGEGGFGRVFKGWIDENTLKPSKVGVGIPVAVKKSNADSLQGLQEWQSEVKFLGKFSHPNLVKLLGYCWEDNQFLLVYECMQKGSLESHLFRSPEPLSWEIRLRIAIGAAKGLAFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKLGPVNGRSHVTTRIMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIALDPNRPANEMNLVEFTKSSLGDKKKLKRIMDQRLDKKYPLTSAFLIAQLILKCLESDPKNRPSMEKVLETLEKAQTIKVKPKVKKSRSSVHQKTKSSNEHNGHSKLRTHSLQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05976 396 PANTHER OS01G0588500 PROTEIN-RELATED 27 359 - -
Trre6g05976 396 MobiDBLite consensus disorder prediction 376 390 - -
Trre6g05976 396 Gene3D Transferase(Phosphotransferase) domain 1 162 384 - -
Trre6g05976 396 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05976 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Trre6g05976 396 ProSitePatterns Protein kinases ATP-binding region signature. 82 115 IPR017441 GO:0005524
Trre6g05976 396 Gene3D Phosphorylase Kinase; domain 1 60 161 - -
Trre6g05976 396 Pfam Protein tyrosine and serine/threonine kinase 80 355 IPR001245 GO:0004672|GO:0006468
Trre6g05976 396 CDD STKc_IRAK 82 357 - -
Trre6g05976 396 SUPERFAMILY Protein kinase-like (PK-like) 61 374 IPR011009 -
Trre6g05976 396 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 162 382 - -
Trre6g05976 396 FunFam Serine/threonine-protein kinase BIK1 43 161 - -
Trre6g05976 396 MobiDBLite consensus disorder prediction 362 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05976 Trre-Chr6 60024113 60026558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05976 46 355 Glycoside Hydrolase AT3G07070 46.395 8.88e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre6g05976 PK_Tyr_Ser-Thr 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05976 - - aprc:113865973 548.125