Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05970 ATGGGAGATGGTGCTGCAGTGACATCATCTGCAACCATGATGGAAGGTCCACCACAAGATGAAAATTCAATGGATTTTGATTACATGAGTGAACTTTTGTTAGATGGTTGTTGGTTGGAAGCTTCTGCTGATGGATCTGAGTTCTTACTGCAAAGTTCTCCTTTTTCCAATCCAATCTTTGACCCTTCATTCTCTTGGCCTTCCTTGGAGAATACCGAGCCACCCCGCAATGAGGATGGGCACGTCGGTATTGAACAAGAAAGCCAGATTATAGTTAATAATGCTGGTAGTAGCGACCGGCAGCGGTGTGAGTTTGAGACTCATTCGGGTGAAGGGGTTAGTAGGTTGTGGATTCCACCGACGCCTAATCCAGGACCTGGCGGATCTTCCATAACGGAGAAGCTGATAAGGGCCCTCAAGTGGATCAAAGATTTCAATAGGAACAAAGATATGCTTATACAAATATGGGTGCCGGTGAATAGAGGGGATGATAGGCCAATTCTAAGAGCTAATGATCTTCCTTTTTCACTTGAATCGAGGTCTTTAAACCTTGCAAAGTACCGAGAGATTTCTGTAAGATATCAGTTTTCTGTAGAGGAGGAGGACTCGAAGGAGTTGGTGGCGGGTTTGCCTGGTCGAGTTTATAGAGATAAGATTCCTGAGTGGACGCCTGATGTTCGATTCTTCAGGAGTGAAGAGTATCCGCGAGTTGGCCATGCTCAAGAGTGTGATATACACGGAACATTAGCGGTTCCGGTGTTTGAACAAGGGAGCAGGACATGTTTGGGCGTTATTGAAGTGGTGATGACTACACAGCAGAGCAACTATGGCCGTGAACTTGAGACTGTTTGCAAAGCTCTCGAGGTTGTTGATCTCAGAAGCTCTGGACATTCAAGTCTTCAGAATGTGAAGGCGTGCGACAAATCCTATGAAACTGCACTACCTGAGATTCAAGAGGTTTTGAGATCTGCATGTGAAATGCACAAATTACCTTTGGCTCAGACTTGGGTCTCATGCATCCAACAGGGAAAAGACGGGTGCCGGCACTCTGATGATAATTATGCAAACTGTATATCTCCGGTGGAGTATGCGTGCTATGTTGGGGATTCCTCAGTTAAGTTTTTTCACGAGGCTTGCATGGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCCGGGGGCGCTTTCATGACAAACCAACCGTGCTTCTCAGCTGACATAACTTCTTTAAGCAAGACAGATTATCCATTGTCTCATCACGCCAGGTTGTTTGGATTGCGGGCTGCAGTTGCCATACGACTCCGAAGCATCTATAGTACTTCAGATGACTATGTTCTTGAGTTCTTCCTGCCTGTAGATTGCAATGACAGTGAAGAACAGAAAAATATGCTCACATCTTTGTCCATGATTATTCAAAGGGTTTGCCGCAGCTTGCGAGTTATAACAGATAAGGAATTGGATAAAGATAACTTATCATCTAATGAAGTGATGGCTGTTACTGATGGTCGATTTGCTACAAATGCAATTTGGTCGGAATCTCAACACAGTAGGATGGCTGCCTCATTGGGCGGTGAAGAAAAGTTTAGTGAAACATTGGGTAAAAGATTCTCGGAACAAAGGAAGCAACACGAAACTCTTACTTTAAAAGGAGATCTTGATTGTGGTAGGGCGCGTTCTCCTTCTGTGGAGGGTACTTTCTTGTCAAGTTTGGGAGTAAATAGAACTGGAGAGAAAAGACGGGCTAAGGCAGAGAAAACTATCACTCTTCAAGTCCTTAGGCAATATTTTGCCGGAAGTCTAAAAGATGCTGCGAAAAATATTGGCGTCTGTACTACAACTCTGAAAAGAATCTGCAGGCAACACGGGATAAAGCGTTGGCCTTCTCGGAAGATAAAAAAGGTTGGTCATTCCTTGCAGAAACTTCAGCTCGTCATTGACTCGGTTCAGGGTGCCTCTGGTTCATTTCAAATTGATTCCTTCTATTCAAAATTCTCTGACCTATCCTCTCCAAGGACCAGCCTAATCTCAACTCTGAATCAAATCGATAATCAAGCCTCATTAAGCACACTGCCAGATCCCGACTCATTGAGTCCAGAAGGTGCATCGAAATCACCCTCATCTTCATGTAGTCAAAGTTCATTTTCAAGCCATTTCTGTTCCATCATGTCAGAGCAACAACACCACAAAGGCAATGTTGCTGTTGCTGCTGCTGGTAACGAAGATCCATCGGTTGGTGAAGATTCTGTTAATGTTGTATTGAAGAGAATCAGAAGTGAAGCCGAACTTAAAAGCCTGATTCAAGATAATAAAGCAAATCTCATGCCAAGATCACAAAGCCAGGAAACACTAGGTGAAAACCTGAAAACGGAGCATCAGAAATCCTTATTAAAAACCGCTCGCAAAGCATCTCAAAAGGAGGATTCTCACAGAGTAAAAGTAACATTTGGAGATGAGAAAACCCGGTTTAGGTTGCCAAAGAACTGGGGTTATGAAGATCTTGTGCAGGAAATTGCTAGAAGATTTAATGTAAGTGAAATGAGCAAATTCGATATCAAATATTTGGACGATGATTATGAATGGGTATTACTAACTTGTGATGCAGATTTGGAGGAGTGCATTGATGTCGGTCAATCTTCTGAGACTAGTACCATCAAACTTTGTCTGCAACCCTCGAGTAATTTTATCAGGAGTTCTTTAGAATTTAGATAG 2706 0.432 MGDGAAVTSSATMMEGPPQDENSMDFDYMSELLLDGCWLEASADGSEFLLQSSPFSNPIFDPSFSWPSLENTEPPRNEDGHVGIEQESQIIVNNAGSSDRQRCEFETHSGEGVSRLWIPPTPNPGPGGSSITEKLIRALKWIKDFNRNKDMLIQIWVPVNRGDDRPILRANDLPFSLESRSLNLAKYREISVRYQFSVEEEDSKELVAGLPGRVYRDKIPEWTPDVRFFRSEEYPRVGHAQECDIHGTLAVPVFEQGSRTCLGVIEVVMTTQQSNYGRELETVCKALEVVDLRSSGHSSLQNVKACDKSYETALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKDGCRHSDDNYANCISPVEYACYVGDSSVKFFHEACMEHHLLKGQGVAGGAFMTNQPCFSADITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSTSDDYVLEFFLPVDCNDSEEQKNMLTSLSMIIQRVCRSLRVITDKELDKDNLSSNEVMAVTDGRFATNAIWSESQHSRMAASLGGEEKFSETLGKRFSEQRKQHETLTLKGDLDCGRARSPSVEGTFLSSLGVNRTGEKRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGSFQIDSFYSKFSDLSSPRTSLISTLNQIDNQASLSTLPDPDSLSPEGASKSPSSSCSQSSFSSHFCSIMSEQQHHKGNVAVAAAGNEDPSVGEDSVNVVLKRIRSEAELKSLIQDNKANLMPRSQSQETLGENLKTEHQKSLLKTARKASQKEDSHRVKVTFGDEKTRFRLPKNWGYEDLVQEIARRFNVSEMSKFDIKYLDDDYEWVLLTCDADLEECIDVGQSSETSTIKLCLQPSSNFIRSSLEFR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05970 901 Pfam PB1 domain 808 889 IPR000270 GO:0005515
Trre6g05970 901 CDD PB1_NLP 808 889 IPR034891 -
Trre6g05970 901 Pfam RWP-RK domain 585 633 IPR003035 -
Trre6g05970 901 ProSiteProfiles PB1 domain profile. 807 890 IPR000270 GO:0005515
Trre6g05970 901 MobiDBLite consensus disorder prediction 1 22 - -
Trre6g05970 901 SMART PB1_new 807 890 IPR000270 GO:0005515
Trre6g05970 901 ProSiteProfiles RWP-RK domain profile. 572 653 IPR003035 -
Trre6g05970 901 Gene3D - 803 889 - -
Trre6g05970 901 PANTHER PROTEIN NLP8 98 890 IPR045012 GO:0003700
Trre6g05970 901 MobiDBLite consensus disorder prediction 685 708 - -
Trre6g05970 901 SUPERFAMILY CAD & PB1 domains 801 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05970 Trre-Chr6 59951619 59955225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05970 19 892 NLP Transcription Factor Family AT1G20640 48.984 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre6g05970 PB1 9.2e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05970 - - gmx:100790922 1228.77