Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05969 ATGGGAGATGGTGCTGCAGTGACATCATCTGCAACCATGATGGAAGGTCCACCACAAGATGAAAATTCAATGGATTTTGATTACATGAGTGAACTTTTGTTAGATGGTTGTTGGTTGGAAGCTTCTGCTGATGGATCTGAGTTCTTACTGCAAAGTTCTCCTTTTTCCAATCCAATCTTTGACCCTTCATTCTCTTGGCCTTCCTTGGAGAATACCGAGCCACCCCGCAATGAGGATGGGCACGTCGGTATTGAACAAGAAAGCCAGATTATAGTTAATAATGCTGGTAGTAGCGACCGGCAGCGGTGTGAGTTTGAGACTCATTCGGGTGAAGGGGTTAGTAGGTTGTGGATTCCACCGACGCCTAATCCAGGACCTGGCGGATCTTCCATAACGGAGAAGCTGATAAGGGCCCTCAAGTGGATCAAAGATTTCAATAGGAACAAAGATATGCTTATACAAATATGGGTGCCGGTGAATAGAGGGGATGATAGGCCAATTCTAAGAGCTAATGATCTTCCTTTTTCACTTGAATCGAGGTCTTTAAACCTTGCAAAGTACCGAGAGATTTCTGTAAGATATCAGTTTTCTGTAGAGGAGGAGGACTCGAAGGAGTTGGTGGCGGGTTTGCCTGGTCGAGTTTATAGAGATAAGATTCCTGAGTGGACGCCTGATGTTCGATTCTTCAGGAGTGAAGAGTATCCGCGAGTTGGCCATGCTCAAGAGTGTGATATACACGGAACATTAGCGGTTCCGGTGTTTGAACAAGGGAGCAGGACATGTTTGGGCGTTATTGAAGTGGTGATGACTACACAGCAGAGCAACTATGGCCGTGAACTTGAGACTGTTTGCAAAGCTCTCGAGGTTGTTGATCTCAGAAGCTCTGGACATTCAAGTCTTCAGAATGTGAAGCAGGCGTGCGACAAATCCTATGAAACTGCACTACCTGAGATTCAAGAGGTTTTGAGATCTGCATGTGAAATGCACAAATTACCTTTGGCTCAGACTTGGGTCTCATGCATCCAACAGGGAAAAGACGGGTGCCGGCACTCTGATGATAATTATGCAAACTGTATATCTCCGGTGGAGTATGCGTGCTATGTTGGGGATTCCTCAGTTAAGTTTTTTCACGAGGCTTGCATGGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCCGGGGGCGCTTTCATGACAAACCAACCGTGCTTCTCAGCTGACATAACTTCTTTAAGCAAGACAGATTATCCATTGTCTCATCACGCCAGGTTGTTTGGATTGCGGGCTGCAGTTGCCATACGACTCCGAAGCATCTATAGTACTTCAGATGACTATGTTCTTGAGTTCTTCCTGCCTGTAGATTGCAATGACAGTGAAGAACAGAAAAATATGCTCACATCTTTGTCCATGATTATTCAAAGGGTTTGCCGCAGCTTGCGAGTTATAACAGATAAGGAATTGGATAAAGATAACTTATCATCTAATGAAGTGATGGCTGTTACTGATGGTCGATTTGCTACAAATGCAATTTGGTCGGAATCTCAACACAGTAGGATGGCTGCCTCATTGGGCGGTGAAGAAAAGTTTAGTGAAACATTGGGTAAAAGATTCTCGGAACAAAGGAAGCAACACGAAACTCTTACTTTAAAAGGAGATCTTGATTGTGGTAGGGCGCGTTCTCCTTCTGTGGAGGGTACTTTCTTGTCAAGTTTGGGAGTAAATAGAACTGGAGAGAAAAGACGGGCTAAGGCAGAGAAAACTATCACTCTTCAAGTCCTTAGGCAATATTTTGCCGGAAGTCTAAAAGATGCTGCGAAAAATATTGGCGTCTGTACTACAACTCTGAAAAGAATCTGCAGGCAACACGGGATAAAGCGTTGGCCTTCTCGGAAGATAAAAAAGGTTGGTCATTCCTTGCAGAAACTTCAGCTCGTCATTGACTCGGTTCAGGGTGCCTCTGGTTCATTTCAAATTGATTCCTTCTATTCAAAATTCTCTGACCTATCCTCTCCAAGGACCAGCCTAATCTCAACTCTGAATCAAATCGATAATCAAGCCTCATTAAGCACACTGCCAGATCCCGACTCATTGAGTCCAGAAGGTGCATCGAAATCACCCTCATCTTCATGTAGTCAAAGTTCATTTTCAAGCCATTTCTGTTCCATCATGTCAGAGCAACAACACCACAAAGGCAATGTTGCTGTTGCTGCTGCTGGTAACGAAGATCCATCGGTTGGTGAAGATTCTGTTAATGTTGTATTGAAGAGAATCAGAAGTGAAGCCGAACTTAAAAGCCTGATTCAAGATAATAAAGCAAATCTCATGCCAAGATCACAAAGCCAGGAAACACTAGGTGAAAACCTGAAAACGGAGCATCAGAAATCCTTATTAAAAACCGCTCGCAAAGCATCTCAAAAGGAGGATTCTCACAGAGTAAAAGTAACATTTGGAGATGAGAAAACCCGGTTTAGGTTGCCAAAGAACTGGGGTTATGAAGATCTTGTGCAGGAAATTGCTAGAAGATTTAATGTAAGTGAAATGAGCAAATTCGATATCAAATATTTGGACGATGATTATGAATGGGTATTACTAACTTGTGATGCAGATTTGGAGGAGTGCATTGATGTCGGTCAATCTTCTGAGACTAGTACCATCAAACTTTGTCTGCAACCCTCGAGTAATTTTATCAGGAGTTCTTTAGAATTTAGATAG 2709 0.4323 MGDGAAVTSSATMMEGPPQDENSMDFDYMSELLLDGCWLEASADGSEFLLQSSPFSNPIFDPSFSWPSLENTEPPRNEDGHVGIEQESQIIVNNAGSSDRQRCEFETHSGEGVSRLWIPPTPNPGPGGSSITEKLIRALKWIKDFNRNKDMLIQIWVPVNRGDDRPILRANDLPFSLESRSLNLAKYREISVRYQFSVEEEDSKELVAGLPGRVYRDKIPEWTPDVRFFRSEEYPRVGHAQECDIHGTLAVPVFEQGSRTCLGVIEVVMTTQQSNYGRELETVCKALEVVDLRSSGHSSLQNVKQACDKSYETALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKDGCRHSDDNYANCISPVEYACYVGDSSVKFFHEACMEHHLLKGQGVAGGAFMTNQPCFSADITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSTSDDYVLEFFLPVDCNDSEEQKNMLTSLSMIIQRVCRSLRVITDKELDKDNLSSNEVMAVTDGRFATNAIWSESQHSRMAASLGGEEKFSETLGKRFSEQRKQHETLTLKGDLDCGRARSPSVEGTFLSSLGVNRTGEKRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGSFQIDSFYSKFSDLSSPRTSLISTLNQIDNQASLSTLPDPDSLSPEGASKSPSSSCSQSSFSSHFCSIMSEQQHHKGNVAVAAAGNEDPSVGEDSVNVVLKRIRSEAELKSLIQDNKANLMPRSQSQETLGENLKTEHQKSLLKTARKASQKEDSHRVKVTFGDEKTRFRLPKNWGYEDLVQEIARRFNVSEMSKFDIKYLDDDYEWVLLTCDADLEECIDVGQSSETSTIKLCLQPSSNFIRSSLEFR 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05969 902 Pfam RWP-RK domain 586 634 IPR003035 -
Trre6g05969 902 Gene3D - 804 890 - -
Trre6g05969 902 SMART PB1_new 808 891 IPR000270 GO:0005515
Trre6g05969 902 MobiDBLite consensus disorder prediction 686 709 - -
Trre6g05969 902 ProSiteProfiles PB1 domain profile. 808 891 IPR000270 GO:0005515
Trre6g05969 902 MobiDBLite consensus disorder prediction 1 22 - -
Trre6g05969 902 PANTHER PROTEIN NLP8 98 891 IPR045012 GO:0003700
Trre6g05969 902 CDD PB1_NLP 809 890 IPR034891 -
Trre6g05969 902 Pfam PB1 domain 809 890 IPR000270 GO:0005515
Trre6g05969 902 SUPERFAMILY CAD & PB1 domains 802 893 - -
Trre6g05969 902 ProSiteProfiles RWP-RK domain profile. 573 654 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05969 Trre-Chr6 59951619 59955225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05969 19 893 NLP Transcription Factor Family AT1G20640 48.929 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre6g05969 PB1 9.2e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05969 - - gmx:100790922 1235.32