Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05941 ATGTCATCGGCGGCGAGAACCAATGTCTCCGGCAGTAACGAAGGAAAACACTATCCTCCTCCACTCGCCTCTCACAACGATATCCTCAATGACTCTACTGTCTTCTGGAACACTCTTCGTCGCTTTCACTTTCTTATGGCTACCAAATTCATGATTCCTGTGATTGGAGGTAAGGAGCTAGATTTGCACGTTCTTTACGTGGAAGTTACAAGGAGAAGCGGTTATGAGAAGGTAGTTGTGGAGAAGAAATGGAGAGAAGTAGGTAGTGTATTTAGATTCTCATCAACAACTACAAGTGCTTCTTTTGTACTAAGAAAACATTACTTGAATCTTCTTTACCATTACGAACAAGTTCACTTCTTCAAAGTTCAGGGTCCTATATTCACTCCATCAGCAGATGCATCTTCTGGAAATAGTCCCTCGTGGCGACCTGAATTGGCTATTGTTCAATATTCACCTAAGATGGTAAATGATAGTGCCCAATCTCATGATGAAGTGAATGTAGATAGTTCATGTCTTTTGGGAAAAGGAACAATAGAAGGAAAATTTGATTGTGGTTATATAGTGTCAGTAAAATTGGGTTCAGAGGTTCTCAAAGGGGTGCTTTACCATCCAGAACAAGTGGTTGCTGCTCCATCATTGGTTCCACAACATGCTATTGTACCATTCAATCTTCAATCTCATAGTTCTGGTAGGAGAAAGAGAAGAAAAAGAAAGTGGGACCCAAACTATCCAAAACCAAATAGGAGTGGCTATAACTTTTTCTTTGCTGAAAAACATTACAAGCTCAAAGAACTCTATCCAAACAGAGAAAGGGAATTTACTAAAATGATTGGTCAATCCTGGAATAGTCTTAGCCCTGAAGAAAGAATGATTTATCAAAACATTGGCTTAAGGGACAAAGAAAGGTACAAAAGAGAATTGACAGAGTACAAAGAGAAAATGAAGGTTGGGCAGAATGTAGAACTTGGGCTTCCATAA 981 0.3945 MSSAARTNVSGSNEGKHYPPPLASHNDILNDSTVFWNTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVVEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKVQGPIFTPSADASSGNSPSWRPELAIVQYSPKMVNDSAQSHDEVNVDSSCLLGKGTIEGKFDCGYIVSVKLGSEVLKGVLYHPEQVVAAPSLVPQHAIVPFNLQSHSSGRRKRRKRKWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSPEERMIYQNIGLRDKERYKRELTEYKEKMKVGQNVELGLP 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05941 326 CDD HMG-box_AtHMGB9-like 245 311 - -
Trre6g05941 326 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Trre6g05941 326 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Trre6g05941 326 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 245 312 IPR009071 -
Trre6g05941 326 MobiDBLite consensus disorder prediction 1 22 - -
Trre6g05941 326 Pfam HMG (high mobility group) box 245 312 IPR009071 -
Trre6g05941 326 Gene3D - 23 126 IPR036431 GO:0003677
Trre6g05941 326 SMART bright_3 30 121 IPR001606 GO:0003677
Trre6g05941 326 SMART ARID_2 26 116 - -
Trre6g05941 326 Gene3D High mobility group box domain 228 323 IPR036910 -
Trre6g05941 326 SUPERFAMILY HMG-box 242 315 IPR036910 -
Trre6g05941 326 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 320 - -
Trre6g05941 326 Coils Coil 301 321 - -
Trre6g05941 326 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Trre6g05941 326 SMART hmgende2 244 313 IPR009071 -
Trre6g05941 326 SUPERFAMILY ARID-like 28 129 IPR036431 GO:0003677
Trre6g05941 326 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05941 Trre-Chr6 59706658 59708519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05941 16 317 ARID Transcription Factor Family AT1G76110 63.192 5.36e-134 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre6g05941 ARID 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05941 - - gmx:100784746 514.998